UFO01421.5prime Sequence
1122 bp (989 high quality bases) assembled on 2008-09-15
> UFO01421.5prime
CAGTCGACATGGCCGCGAAACTGGAGGTGCGCGAGGCCATGCTGACCGAG
AAGAGGGTCTGCCGCTTCTGTCTGACCGAGCAGAAGCTGGCCTCGATTTT
CGAGGAGAATCCGCGGGTGAAAACAACCGCCAATCTGCCGCTGCAGATTA
TGGCCATCACGGCGATCGAGGTCTACGCCGGCGACGGAATGCCGGGGCAC
ATCTGTCTGGAGTGCCGCCTCCTCTTCGAGCACTGCTACCGCTTCAAGCA
GATGTGCAAGCGGGCGGAGACCCTCCTGCGCCAGTATCCGCTCACGGGTA
ACTGGCCATCGCCGCTGGAGAAGCCCCGTGCGCCCATGACGATGGTGGCT
TCCAAGAAGTTGTTGGTCGTGCCAGCAAAGACAGCCGAGCCAAGCGAAAC
GCCCAAAAAGCTGCTGAACACAATGGCCAAATCCAGTAGTCAGGTGATCA
TCGAGGACGTCCAGGTGCTGGAGAGCGCCATGGTGACCCCCAGGACGGTA
GCCGGTTCCTCTCCAGTGCCACGTCGTTCGCACGCCTATGAGCTGAAGGT
GGATAACAACCAGGAGCTGTCCATGGACGATGTGCAGAGCATGCTGGAGG
ATATGGCCAGTGAGCTAGAGAAGGAGTTCCCCGATATCCCCCAGAAGGCA
TCACCCGTCAAGCCGAAGGTGCTGAACAAGTCCTCGATTAGGATCTTGAA
CAAGGGACCCGCCGCTCCGGTGGAACCGCGCCTGGCCACACCCAAAGTCA
AGCGAGATGATAGTGGCAATGTGGCCATAGTGACAGAGCTTCTGGACTCG
GATCTGCCATTGGACGATCAAGATGATCCGACCAAGAACGCCGAGAAGTG
GCCACCGATGTGTTCCCCTGTCCCGATTGCGAACGCTCCTTTCCGCTGCA
GCAGCTGCTCGAGATCCATCGGCTGAATCACACTCGCTCGCGCAGCTTCC
AGTGTCTCTGTGCGAGAAAAGCTTCTTTTTCAAGTACGACTGACAAGCAC
AACTTTGGTGCCCACGGCGAGGGGCATTCAGTGCCGCCATCTGCTCGAAA
GCCTTTCACACGGAAGGCATTGCTCCATCGCCACGAGCCCACCTCCACGG
ACGTACTAGTCATCTGGCTGTT
UFO01421.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pita-RA | 2472 | CG3941-RA | 297..1398 | 9..1106 | 5125 | 98.2 | Plus |
| pita-RB | 2529 | CG3941-RB | 514..1455 | 169..1106 | 4325 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23550097..23551038 | 1106..169 | 4150 | 97.2 | Minus |
| 2R | 25286936 | 2R | 23554253..23554416 | 172..9 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:56:35 has no hits.
UFO01421.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:10 Download gff for
UFO01421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 288..1398 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:57 Download gff for
UFO01421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 294..1404 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:15 Download gff for
UFO01421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 288..1398 | 1..1106 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:15 Download gff for
UFO01421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23550097..23551036 | 171..1106 | 97 | <- | Minus |
| 2R | 23554255..23554425 | 1..170 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:10 Download gff for
UFO01421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19437620..19438559 | 171..1106 | 97 | <- | Minus |
| arm_2R | 19441778..19441948 | 1..170 | 97 | | Minus |
