UFO01422.5prime Sequence
1140 bp (1001 high quality bases) assembled on 2008-09-15
> UFO01422.5prime
CAGTCGACATGATAATGGTGCGAAGACGACAACGGCCCGCCAAGGAAGCC
GCATCCTCATCCTCTGGTGGAGCTTCCTCGGGATCGGGAATTCCTGTTGA
CCAGGCACTGCCACTGAATGTGGCGGGAAATCTGCTGGAGGATCAGTATT
TTGCCAGCCCCAAGCGGAAAGACTGCCGTTTGATGAAGGTCACTCAAAAT
GGCCAACTGCCGGAAGCCACAATGATGGCACACAACAAAGACAACAAAGC
GGGTCGCACAATAGGAGTTCCCTTGGCCACGCGCTCACAAACTCGCACCA
TTGAGAACTTCTTCAAAGCCAATGCTGCCGCTAAGGATTCCCAAAAGACA
ATACACACAGAGGAGCAGTTGAATCTAGGAAATCAGGAACTGAAACTGGA
CGATGAGGAGCTAAATGGACAGATAAAACTAGATGACGAGGTGCTAAAGC
TGGCAGACAAGCAGATAAATGAAAACCTTCCCTTTGCCGACGAAGTAGAT
GCCAAGGCAGAACAAAAGCTTATGGATGAGGAACTGCAGCAGGTGGTGGA
GGAACTTCTGTTCGATGGCAGTTCCAGAGCGTCCTCCAATTCGCCCTTTT
ATCAGCATGATATGGATGTCATGCAGGAGATCCAGCAGACTCCAGAAATT
CCACACATCAAAAAGGTCACAGAGCCGCTCGAGGGACTGGGCTCTCTGGC
CGACTTCCAGACACATCGCTCTGCGCTGAGGGACAGCCACAGTTCCACGC
ACAGCAGCAGCACCGACAACATCTTCCTGCAGGAGCCGGTAGTGACCCTG
GACATTGATCGCACGCCCACCAAAGCCTCCAGCATAAAGATCAATCGGAG
CTTCGAACTGGCCGGAGCCGTATTCTCATCACCTCCGTCGGTGCTAAACG
CCTGTCTCAATGGACGCTTCAATCAAATAGTAAGCCTGAATGGACAAAAG
GAGCGCTGGACTTGCCGCACTTCGATTTGATCACATGACAGTAGTCTGCG
ACAGCGGAGTAGCCTGTGGTCTCACTGCCAATACGAATCGCCCAGCGGGG
CAACCCCGACGCAGAAAACAGCCAACCGCATCGCATCCCTCTGCCCCTCG
CCAATCAACGCTTGGAGTAACTGAGGAATGCAGTCGATCG
UFO01422.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pr-set7-RD | 3175 | CG3307-RD | 166..1271 | 9..1108 | 5275 | 99 | Plus |
| pr-set7-RB | 4183 | CG3307-RB | 372..1477 | 9..1108 | 5275 | 99 | Plus |
| pr-set7-RA | 3311 | CG3307-RA | 302..1407 | 9..1108 | 5275 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14316937..14317788 | 263..1108 | 3780 | 98.1 | Plus |
| 3R | 32079331 | 3R | 14316612..14316868 | 9..265 | 1285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:13:13 has no hits.
UFO01422.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:45 Download gff for
UFO01422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RA | 289..1413 | 1..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:36 Download gff for
UFO01422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RB | 359..1483 | 1..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:23 Download gff for
UFO01422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RA | 294..1418 | 1..1116 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:23 Download gff for
UFO01422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14316604..14316867 | 1..264 | 98 | -> | Plus |
| 3R | 14316939..14317799 | 265..1116 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:45 Download gff for
UFO01422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10142326..10142589 | 1..264 | 98 | -> | Plus |
| arm_3R | 10142661..10143521 | 265..1116 | 98 | | Plus |
