UFO01423.5prime Sequence
1137 bp (1008 high quality bases) assembled on 2008-09-15
> UFO01423.5prime
CAGTCGACATGATGAAGCATCCGCAGGATCTGAGTGTCACGGATGACCAG
CAGTTAATGAAGGTGAACAAGGTGGAGAAGATGGAGCAGGAGTTGCACGA
CCCCGAATCGGAGAGCCACATAATGCACGCGGATGCCCTGGCCTCTGCCT
ATCCGGCTGCCTCGCAGCCCCACAGTCCGATCGGCCTCGCCCTCAGCCCC
AATGGCGGTGGGCTGGGACTGAGCAACAGTAGCAACCAGAGCAGCGAGAA
CTTTGCGCTCTGCAACGGAAACGGAAATGCGGGCAGCGCAGGAGGCGGAA
GTGCCAGCAGTGGCAGCAACAACAACAACAGCATGTTCTCACCCAACAAC
AACTTGAGCGGAAGCGGAAGTGGGACTAACAGCAGTCAGCAGCAATTGCA
GCAGCAACAACAACAGCAATCACCGACGGTCTGCGCCATTTGTGGAGATC
GGGCGACGGGCAAACATTATGGAGCCTCCAGCTGCGACGGCTGCAAAGGA
TTCTTCAGGAGGAGTGTCAGGAAAAATCATCAGTACACTTGCAGATTTGC
GCGAAACTGCGTTGTGGACAAGGACAAACGGAATCAGTGCCGCTACTGCC
GGCTGAGGAAGTGCTTCAAGGCGGGCATGAAGAAGGAGGCGGTGCAAAAC
GAGCGGGATCGCATTAGCTGCCGCCGCACCTCCAATGACGACCCGGATCC
GGGCAATGGGCTGTCTGTGATTTCCTTGGTTAAGGCGGAGAATGAGTCGC
GTCAGTCGAACGCAGGCGCTGCCATGGAGCCAAACATTAACGAGGACCTC
TCCAACAAGCAGTTCGCGAGCATCAACGATGTCTGCGAGTCGATGAAGCA
GCAGCTGCTGACCCTGGTGGAATGGGCTAAGCAGATTCCGGCCTTTAACG
AGCTGCAGCTGGATGACCAGGTGGCACTGCTACGCGCCCATGCTGGCGAG
CATTTGCTCTCGGCCTGTCTCGTCGTTCGATGCACTTGAGATGTCTCTGC
TGAGCAACATTGTGTGATCACAGCACTGTCAGATCCCCTTGTGTCCGCGA
TGACTCGATCGCGTACTCTGACTGGACGCTAAGATGACTGACCGATCCTG
CAGCTAGCTCTGACAGCAGCTAAACATGCATCTCGCT
UFO01423.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hnf4-RE | 3876 | CG9310-RE | 1209..2255 | 8..1045 | 5015 | 99 | Plus |
Hnf4-RA | 3307 | CG9310-RA | 640..1686 | 8..1045 | 5015 | 99 | Plus |
Hnf4-RB | 2739 | CG9310-RB | 195..1145 | 104..1045 | 4535 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8689814..8690253 | 544..105 | 2200 | 100 | Minus |
2L | 23513712 | 2L | 8689180..8689629 | 989..541 | 2185 | 99.6 | Minus |
2L | 23513712 | 2L | 8704361..8704458 | 105..8 | 490 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:09:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6898 | 260..425 | 232 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2432 | 290..419 | 224 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2411 | 294..425 | 220 | 70.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6852 | 305..418 | 215 | 66.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6923 | 222..414 | 204 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2526 | 222..427 | 202 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2478 | 260..417 | 197 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2962 | 222..418 | 185 | 59.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2810..2927 | 313..429 | 172 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6792..6930 | 222..360 | 162 | 62.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1027..1167 | 290..428 | 159 | 59.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2371..2563 | 222..417 | 154 | 57 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1061..1151 | 260..353 | 139 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1614 | 303..413 | 136 | 59.5 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7376..7455 | 255..338 | 112 | 65.9 | Plus |
UFO01423.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:07 Download gff for
UFO01423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hnf4-RA | 887..1935 | 8..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:38 Download gff for
UFO01423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hnf4-RA | 636..1684 | 8..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:48 Download gff for
UFO01423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hnf4-RA | 640..1688 | 8..1048 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:48 Download gff for
UFO01423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8689129..8689625 | 545..1032 | 97 | <- | Minus |
2L | 8689814..8690252 | 106..544 | 100 | <- | Minus |
2L | 8704361..8704458 | 8..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:07 Download gff for
UFO01423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8689129..8689625 | 545..1032 | 97 | <- | Minus |
arm_2L | 8704361..8704458 | 8..105 | 100 | | Minus |
arm_2L | 8689814..8690252 | 106..544 | 100 | <- | Minus |