Clone UFO01423 Report

Search the DGRC for UFO01423

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:14
Well:23
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptHnf4-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01423.5prime Sequence

1137 bp (1008 high quality bases) assembled on 2008-09-15

> UFO01423.5prime
CAGTCGACATGATGAAGCATCCGCAGGATCTGAGTGTCACGGATGACCAG
CAGTTAATGAAGGTGAACAAGGTGGAGAAGATGGAGCAGGAGTTGCACGA
CCCCGAATCGGAGAGCCACATAATGCACGCGGATGCCCTGGCCTCTGCCT
ATCCGGCTGCCTCGCAGCCCCACAGTCCGATCGGCCTCGCCCTCAGCCCC
AATGGCGGTGGGCTGGGACTGAGCAACAGTAGCAACCAGAGCAGCGAGAA
CTTTGCGCTCTGCAACGGAAACGGAAATGCGGGCAGCGCAGGAGGCGGAA
GTGCCAGCAGTGGCAGCAACAACAACAACAGCATGTTCTCACCCAACAAC
AACTTGAGCGGAAGCGGAAGTGGGACTAACAGCAGTCAGCAGCAATTGCA
GCAGCAACAACAACAGCAATCACCGACGGTCTGCGCCATTTGTGGAGATC
GGGCGACGGGCAAACATTATGGAGCCTCCAGCTGCGACGGCTGCAAAGGA
TTCTTCAGGAGGAGTGTCAGGAAAAATCATCAGTACACTTGCAGATTTGC
GCGAAACTGCGTTGTGGACAAGGACAAACGGAATCAGTGCCGCTACTGCC
GGCTGAGGAAGTGCTTCAAGGCGGGCATGAAGAAGGAGGCGGTGCAAAAC
GAGCGGGATCGCATTAGCTGCCGCCGCACCTCCAATGACGACCCGGATCC
GGGCAATGGGCTGTCTGTGATTTCCTTGGTTAAGGCGGAGAATGAGTCGC
GTCAGTCGAACGCAGGCGCTGCCATGGAGCCAAACATTAACGAGGACCTC
TCCAACAAGCAGTTCGCGAGCATCAACGATGTCTGCGAGTCGATGAAGCA
GCAGCTGCTGACCCTGGTGGAATGGGCTAAGCAGATTCCGGCCTTTAACG
AGCTGCAGCTGGATGACCAGGTGGCACTGCTACGCGCCCATGCTGGCGAG
CATTTGCTCTCGGCCTGTCTCGTCGTTCGATGCACTTGAGATGTCTCTGC
TGAGCAACATTGTGTGATCACAGCACTGTCAGATCCCCTTGTGTCCGCGA
TGACTCGATCGCGTACTCTGACTGGACGCTAAGATGACTGACCGATCCTG
CAGCTAGCTCTGACAGCAGCTAAACATGCATCTCGCT

UFO01423.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
Hnf4-RE 3876 CG9310-RE 1209..2255 8..1045 5015 99 Plus
Hnf4-RA 3307 CG9310-RA 640..1686 8..1045 5015 99 Plus
Hnf4-RB 2739 CG9310-RB 195..1145 104..1045 4535 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8689814..8690253 544..105 2200 100 Minus
2L 23513712 2L 8689180..8689629 989..541 2185 99.6 Minus
2L 23513712 2L 8704361..8704458 105..8 490 100 Minus
Blast to na_te.dros performed 2014-11-28 23:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6898 260..425 232 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2304..2432 290..419 224 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2291..2411 294..425 220 70.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6852 305..418 215 66.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6729..6923 222..414 204 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2317..2526 222..427 202 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2478 260..417 197 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2767..2962 222..418 185 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2810..2927 313..429 172 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6792..6930 222..360 162 62.9 Plus
roo 9092 roo DM_ROO 9092bp 1027..1167 290..428 159 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2371..2563 222..417 154 57 Plus
roo 9092 roo DM_ROO 9092bp 1061..1151 260..353 139 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1506..1614 303..413 136 59.5 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7376..7455 255..338 112 65.9 Plus

UFO01423.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:07 Download gff for UFO01423.5prime
Subject Subject Range Query Range Percent Splice Strand
Hnf4-RA 887..1935 8..1048 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:38 Download gff for UFO01423.5prime
Subject Subject Range Query Range Percent Splice Strand
Hnf4-RA 636..1684 8..1048 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:48 Download gff for UFO01423.5prime
Subject Subject Range Query Range Percent Splice Strand
Hnf4-RA 640..1688 8..1048 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:48 Download gff for UFO01423.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8689129..8689625 545..1032 97 <- Minus
2L 8689814..8690252 106..544 100 <- Minus
2L 8704361..8704458 8..105 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:07 Download gff for UFO01423.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8689129..8689625 545..1032 97 <- Minus
arm_2L 8704361..8704458 8..105 100   Minus
arm_2L 8689814..8690252 106..544 100 <- Minus