UFO01424.5prime Sequence
1139 bp (1008 high quality bases) assembled on 2008-09-15
> UFO01424.5prime
CAGTCGACATGGTCTGCAAAACTATCTCACCGAGTGTAAACATGCAGCTG
AAGATGGAACAGCAGACAACGCAGCAGCAGCAGCAGCAACAGCAACAGCA
ACAGCAACAGCAACAATTGCAACAGCAACAGCATCAGGCTCTAACCAAGC
AGCAGCTTCAACTGCTGGACAAAATCAAACTCGAGTCCAGCAACGGCGCC
GATCAGTTGGCCCAGCAGACGGCCAACAATCTGGATGAGCAGCAGGAGCA
GCAGCAACAACACCAACAGCAAGCCGCAACATCGGTGGGCGTGGTGGTGC
AGACGGGCCAAGCGGGCGTCAGCGAACCGGAGGAGCAGTACGTGGTGGTG
CCACGCAACCAGCGCCGTATTCTCACCACAGCCGGCACACTTGAATTAAA
CGAAGCTCGTGAAGGAGAACCGAGCACAAACGCCAGCAACGCGAGCTCAG
GATCTGCTTCGGATAGCCACATCGAGTACCAGCGCAGTGCACACCAATCT
CCCGGAGCCACTCACTACGTGCAGATGGCGCCACGCAACGCAGAGGTGAC
GGAACAGGTGGGAGCTGCTGCCGGAGCTCCGCCGGGCACCATCTTCGCCT
ATCCTATTATCTGCAACGGTGACGATGTGGCCGCGATCAAAATCGAAACA
CTCGAGAAGGGAGAGGCGACGGGGGAGTCGCAACAACAGCAGCAGCAACT
GCAGCAACACCAGCATCAGCAGCAACAGCAATGTCCCACACCCAACGGAG
CTAGCTACGGCGAGACCATAGTGATCAGCAGCGAGGCGGAGGCACTGCAG
CATCACCACCAACAGCAGCAGCAGCACCAGCAGCAGCAGCATCAGCAGCA
ACACCACCAACACCAGGCGGCAGCTGCAGCATCGGCGGCGGCCCAGACGG
GTCACATTGCCACCAGTTCGCATGGGGGCACCGTGCGCTTCGTTACGGAG
GATGTACGCTTCACCACCGCCGGACCGGAGACATCCGCCTCGAATATGTA
CTACGATGTACCCGGGGGTGGGAGGGCAGGGTGCATGGCCAACGAGAGTT
CAAGAACCCTACGCCGGAACTTAGGCAACGCCATATGGCCCTTCCCGCCA
GTCAGTTCGAGCATGCTGCGACCTCAGACATAGTCGCGA
UFO01424.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATAe-RA | 3086 | CG10278-RA | 466..1547 | 9..1099 | 5080 | 98.2 | Plus |
| GATAe-RC | 2879 | CG10278-RC | 301..1340 | 51..1099 | 4870 | 98.1 | Plus |
| GATAe-RB | 2983 | CG10278-RB | 408..1444 | 54..1099 | 4855 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16016709..16017331 | 392..1014 | 3070 | 99.5 | Plus |
| 3R | 32079331 | 3R | 16016226..16016565 | 52..391 | 1700 | 100 | Plus |
| 3R | 32079331 | 3R | 16012739..16012787 | 9..57 | 230 | 98 | Plus |
Blast to na_te.dros performed 2014-11-28 23:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2539 | 52..281 | 346 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6946 | 38..272 | 340 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6922 | 82..285 | 314 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2496 | 80..283 | 286 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2762..2970 | 680..889 | 281 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2774..2971 | 680..881 | 279 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2780..3029 | 650..896 | 279 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2444..2665 | 66..281 | 274 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..3031 | 148..881 | 267 | 54.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2573..2832 | 20..283 | 258 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6493..6950 | 41..473 | 201 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6940..7209 | 13..283 | 200 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6866 | 148..286 | 165 | 65 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1038..1151 | 168..283 | 160 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6778 | 226..285 | 153 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1111 | 238..288 | 152 | 79.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6791 | 212..283 | 150 | 73 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6818 | 187..283 | 144 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1574 | 238..285 | 129 | 77.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1076..1161 | 188..271 | 127 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6835 | 188..285 | 124 | 66.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 963..1011 | 219..267 | 119 | 71.4 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..7986 | 240..271 | 115 | 84.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9430 | 240..271 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6793 | 238..272 | 112 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1552..1591 | 235..274 | 110 | 75 | Plus |
UFO01424.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:41 Download gff for
UFO01424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-RA | 466..1492 | 9..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:40 Download gff for
UFO01424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-RA | 469..1495 | 9..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:48 Download gff for
UFO01424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-RA | 466..1492 | 9..1037 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:48 Download gff for
UFO01424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16012739..16012783 | 9..53 | 100 | -> | Plus |
| 3R | 16016228..16016565 | 54..391 | 100 | -> | Plus |
| 3R | 16016709..16017331 | 392..1014 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:41 Download gff for
UFO01424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11838461..11838505 | 9..53 | 100 | -> | Plus |
| arm_3R | 11841950..11842287 | 54..391 | 100 | -> | Plus |
| arm_3R | 11842431..11843053 | 392..1014 | 99 | == | Plus |
