UFO01425.5prime Sequence
1139 bp (1021 high quality bases) assembled on 2008-09-15
> UFO01425.5prime
CAGTCGACATGAACCCATCCGAGCTGCGCATGATGTGGATGAGTAGTCAG
TACAACTCGGAGCGCATTACACTGGAGGATGCGGCCACTCTGCTGGGTCA
TCCCACTGTTGGACTCTCTGTCATGGAGGACCTCTCCGCCCATCAGCCAA
CTTTGGACATGAATCCGATGATGAGCCTAATGGGGGGAGATTTCACTGGT
CAAGCGGCGGCGACTGCTGCGGCACTGGGTGTACAGCCGGGCACCCTGAT
TGCCACCAACTCGAACAACCTGTACGGATTTGCCCACATGGGCGGCCTGC
AGCAGCAACTGCTCCAGCAGTCGGCGGCGGCGGCAGTCTTCCAGAACTAT
GCGGAGGCAATGGATAACGATGTGGAGAACGGCATGGTTGGCATGGCCAT
GGAGGCGGTCGTGGACGATGACGACCAAGTGTACGGTCAGAGGGACAATA
ACTTTGATGATAATGGATCCGAGTTGGAGCCCAAGCAAGAGATTATCAAC
ATCGACGACTTTGTGATGATGAACGAGGACAATAATTCGTACGATGGCAC
CGACTTTATGACCTCCTCCGATAAGGACATTTCGCAGTCCTCCTCCTCCT
GCATGGCACAGATGCCCGGAAGCTTGGGCGTCCCTGGAGTCGAGCACGAT
CTTTTGGTTCCACTGCCCGATGGCCTGCTGCACCACAAGCTGCTGGGCAC
AACTCTGGTCCCTGCGATGGGTACGCTAAATGGCAATGCCTTTGGCAACA
TAATGGTCAGCACTGAAAACACATCCAGCAAGCAAATGCAGCGCACCTAT
AGTACGGCCAAAGGGAGCCAATTCCACCGCAACCACCGCCACCTGCAGTG
CCTCCACGTCCTCCGCATTGCGATCACAGCGCAAGACGCGCAAGATCGAG
CCCGTTAACAGGCCAGGACTGGTGCTGAGACCCCCATCGCCTACAGGGGC
ACATTGACCCTTCGTGATCCCCATACAGAAAGATGGCATGCTGTCTGTAA
ACGTTGTGCGCCATTGGAGTGAGCACACATTCTACACAAAATCGCGACGT
TTTGCAGCATGGCTGGTGCCGAGGCGAACTAATTTGGTGGGTACTTAACA
CTAGAATGGAGGGGAACAAGGCACACCTAGTTCCGGAAT
UFO01425.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfmbt-RD | 4765 | CG16975-RD | 300..1433 | 9..1134 | 5215 | 97.9 | Plus |
| Sfmbt-RC | 4846 | CG16975-RC | 312..1445 | 9..1134 | 5215 | 97.9 | Plus |
| Sfmbt-RB | 4777 | CG16975-RB | 312..1445 | 9..1134 | 5215 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13174440..13175277 | 990..155 | 3980 | 99.4 | Minus |
| 2L | 23513712 | 2L | 13175666..13175813 | 156..9 | 740 | 100 | Minus |
| 2L | 23513712 | 2L | 13173805..13173942 | 1123..990 | 325 | 89.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:47:07 has no hits.
UFO01425.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:42 Download gff for
UFO01425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfmbt-RB | 312..1433 | 9..1123 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:06 Download gff for
UFO01425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfmbt-RC | 310..1431 | 9..1123 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:02 Download gff for
UFO01425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfmbt-RB | 312..1433 | 9..1123 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:02 Download gff for
UFO01425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13174439..13175276 | 156..990 | 99 | <- | Minus |
| 2L | 13175667..13175813 | 9..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:42 Download gff for
UFO01425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13174439..13175276 | 156..990 | 99 | <- | Minus |
| arm_2L | 13175667..13175813 | 9..155 | 100 | | Minus |
