UFO01428.5prime Sequence
1133 bp (1030 high quality bases) assembled on 2008-09-15
> UFO01428.5prime
CAGTCGACATGAGAATCCGGAGCAACCCAATGCCCAGCCGGATGGTGGAC
ATCTTGTGCTTCCTCATCATTGCGGTCTTTCTCCCGGTGGTGTTTATGTT
CGAGATTGTGGTGGTGCTGCCTGCCTTCCATGAACCGGGTGGCTTCTTCC
ACACCTTCACCTTTCTTATGGCCATGTTCCTGGTGTTTAACATCAAGGGA
AACATGATTGCCTGCATGATGATTGACACAAGTGTAAATGTGAAAAAGGT
GGAACCACCATCGGATCAGTTGAATTGGCGTGAGTGCGGCGAGTGCCAGA
AGCTAGCACCACCCAGATCTTGGCATTGCAAGGCCTGCAAAGTGTGCATT
CTGAAGCGGGATCACCACTGTATCTACACCGGCTGCTGCATTGGACTCAG
AAACCATCGCTTCTTCATGGGCTTTATATTCTATCTCTTCGTGGGATCAG
TTTACGCACTGGTGTACAACTCCATATACATGTGGGTCATCCACGGCCAC
ATCTACAGCAACTGGGTGACGGTGTTAAAACTCGCCTGCCCCATGTTACA
CCTGCTCTGGCTTATGGAGTCCTCCTCCTGGCCTACCATGTGCCCATTGT
TTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGACCTGATCGCCAGCGGCATCAGCACCT
TGTCGCCTTGCGTATATATTTGCCCATGTGAAACGGGGCGAGAGTGTCCA
TATTGCCACGTTTAATCAACTGGTGAACTCACCCAGGATGCTGAAACGAA
AAACATATTCTCATAAACCCTTACGAAATAGGCAGTTCCGTACCGCCCAC
TCTGCAATATGGTACTGCGAATCTCTGATTCCT
UFO01428.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10344-RA | 1132 | CG10344-RA | 64..658 | 8..602 | 2975 | 100 | Plus |
| CG10344-RB | 1190 | CG10344-RB | 64..610 | 8..554 | 2735 | 100 | Plus |
| CG10344-RB | 1190 | CG10344-RB | 668..716 | 554..602 | 245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22426313..22426627 | 554..240 | 1575 | 100 | Minus |
| 2R | 25286936 | 2R | 22426682..22426914 | 240..8 | 1165 | 100 | Minus |
| 2R | 25286936 | 2R | 22426207..22426255 | 602..554 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:10:11 has no hits.
UFO01428.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:17 Download gff for
UFO01428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10344-RA | 57..662 | 1..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:11 Download gff for
UFO01428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10344-RA | 45..650 | 1..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:57 Download gff for
UFO01428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10344-RA | 57..662 | 1..607 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:57 Download gff for
UFO01428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22426203..22426254 | 555..607 | 96 | <- | Minus |
| 2R | 22426313..22426626 | 241..554 | 100 | <- | Minus |
| 2R | 22426682..22426919 | 1..240 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:17 Download gff for
UFO01428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18313708..18313759 | 555..607 | 96 | <- | Minus |
| arm_2R | 18313818..18314131 | 241..554 | 100 | <- | Minus |
| arm_2R | 18314187..18314424 | 1..240 | 98 | | Minus |
