UFO01429.5prime Sequence
1122 bp (1015 high quality bases) assembled on 2008-09-15
> UFO01429.5prime
CAGTCGACATGTATCCTGTGAGCTCGCAAAAGAGGTCCTGGACATTCGCC
AATGAGGGCCAGCTCATGGAGTTCCGCGTGGAGCAGAACAGCAAGTATAT
CGAGTCGCACGAGGAGGAGGCGCAGGGTCGCGACCTCAATGAGCACTTTC
TCACGTCGGCGGAGGAGCGCCTGTTGCTGAAGCAGTACGAGATCTACCTG
TTCGATTTCTGCCGCCGCTTCGAACCGACGATGCCCAAGTGCGTTGTGGG
CACGGCCTTCCACTACTTCAAGCGGTTCTATCTGAACAACTCCCCCATGG
ACTATCACCCCAAGGAGATTCTAGCCACATGCGTGTTCGTTGCCTGCAAA
GTTGAGGAGTTCAACGTGTCCATCAACCAGTTCGTGAACAACATCAAGGG
CGACAGGAACAAGGCCACCGACATAGTGTTGTCCAATGAATTACTGCTGA
TTGGACAGCTCAACTACTACCTCACCATACACAATCCGTTCAGACCCATC
GAGGGTTTCCTGATAGATATAAAAACTCGCAGCAATATGCAGAATCCAGA
TCGTCTGCGGCCACATATTGATAGTTTCATTGATTCCACGTACTACTCGG
ATGCCTGTCTTCTGCATACGCCTTCGCAAATTGCATTGGCTGCCGTCCTC
CACGCGGCCAGCAGAGAGCAAGAGAATCTCGATAGCTATGTGACGGATCT
TCTGTTTGTCTCCGCCAGGGAGAAGCTACCCGGACTCATAGATGCCGTGC
GAAAAATTCGCATAATGGTGAAGCAATATCAGCAGCCCGATCGGGAGAAG
GTCAAGGCCATCGAGAAAAAGTTGGACAAGTGCCGAAATCAAGCCAATAA
TCCTGATAGCGAACTCTATAACGAGCGCCTACGCCGATTGTACACCGATG
AGATGACATGCCCGCCGAAGATGCCTCATTCCACATTGCAGATGTGAGCT
CGGACACATCTGCTATGACATCAGCAAGCAGCTTTCTAGACCATCGTTTG
CGCGCGCCCAGTAGTGTCATAATCATAATCATATCATATCATATCACACT
AGCTAGGAGATCTGTCATGACTATGCTGATTCCCACAATAAAGCCGCGCA
CGGACGTCGACATCGATGGATT
UFO01429.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycH-RA | 1065 | CG7405-RA | 10..978 | 9..975 | 4750 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21822006..21822319 | 9..322 | 1555 | 99.7 | Plus |
| 3L | 28110227 | 3L | 21822657..21822885 | 525..753 | 1145 | 100 | Plus |
| 3L | 28110227 | 3L | 21822396..21822597 | 323..524 | 995 | 99.5 | Plus |
| 3L | 28110227 | 3L | 21822941..21823052 | 754..865 | 560 | 100 | Plus |
| 3L | 28110227 | 3L | 21823111..21823214 | 866..968 | 455 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:42:04 has no hits.
UFO01429.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:08 Download gff for
UFO01429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycH-RA | 3..988 | 1..984 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:12 Download gff for
UFO01429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycH-RA | 1..984 | 6..984 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:42 Download gff for
UFO01429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycH-RA | 3..988 | 1..984 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:42 Download gff for
UFO01429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21821999..21822319 | 1..322 | 98 | -> | Plus |
| 3L | 21822396..21822597 | 323..524 | 99 | -> | Plus |
| 3L | 21822657..21822885 | 525..753 | 100 | -> | Plus |
| 3L | 21822941..21823052 | 754..865 | 100 | -> | Plus |
| 3L | 21823111..21823214 | 866..968 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:08 Download gff for
UFO01429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21815496..21815697 | 323..524 | 99 | -> | Plus |
| arm_3L | 21815757..21815985 | 525..753 | 100 | -> | Plus |
| arm_3L | 21816041..21816152 | 754..865 | 100 | -> | Plus |
| arm_3L | 21816211..21816314 | 866..968 | 98 | == | Plus |
| arm_3L | 21815099..21815419 | 1..322 | 98 | -> | Plus |
