UFO01432.5prime Sequence
1142 bp (1028 high quality bases) assembled on 2008-09-15
> UFO01432.5prime
CAGTCGACATGAGCACCGAGTGTCGGATCTGCGGCGAGCGCATCTTCACG
CCGCACCCAAAGAACATCTTCGAGAAGCGCAATCATCGCATTCGGATGGC
CATCGAGCAAATCACGGGCTTAGAGATCGTTTTAGAGAATATGCTGCCCC
AGCACATATGCGCTTGTTGTCTCCTGGACCTGACCCAAGCCGTAGCCTTC
AGGCAGCGATGCCTGGAGACGCACGCAAATCTCCACCAGAGGATCTCCTC
GAAGGCGGGTGTCGCCTCAAAAGGCTCCCCGGAGGTTTCGCCAGTGCTTA
GTGATCCGCTGCTGAAACGGGAGGTGCTGGATGATACAGTAGACACCGAG
GACGATAAGGAGCTACTGGACGATGATAAGGATTTAATGGATGATGATAA
GGATTTCTTGGAGGACGAAAAGCCGATTTTAAGATATCCTCCGGCCAAAA
AAATCCGGATCGAGGACCAAAATTTCCCGAACAGACAGTCCCCACGAGTC
AGGGTCAAGCGGCTTCGTGTGCCTGTGGTCGAGAAGGCAGATAGTCCACC
GCCACCTCCGCGGGAGCACGTCCGAAAGCCCAGAAAGCGGCGACCAAAAC
CCAAGGTCGATCGCTCGATAAAGCGATACGTGTGCGACCAGTGCGGTTGG
TCGTTCAACGATCACAGCAACATGAAGGATCACAAGCTGCGGCACTTCGA
GGAGAAGTTTTCATGCGACGAGTGCGGTCGCAAGTTCTACACCATGCCAC
TGCTCCGATTGCACATTCGAGTCCATCACAAGGGCGAGAAACCGTACGTC
TGCAAGTTCTGCGGTATGGGATTCGCCAATAGTCCCAGCCGCTGTCGTCA
TGAACGTCAAATGCATGCCAACGAGCTGGTGCACCAGTGCAAAACATGCG
GCAAACGATTCACAGCGAGAAGGGACGGCTGAGCACGAGGAGGGGCACAA
GAGTGACCAACCGGATGTCCATATCTGCCTCACATGCAACAGGAGTTCAG
GAGCGCAGTTTTTGCATCGGCACTACTCCACAAAGTATCACGCAGCGGTC
ACTTGCTGGTTATGTTCAAAGAGATCCAGTTTGAGTCGATCCGGCGGATT
TCGGGATATATGGAAAGGCAGCGAATGGAGACACAGCGAACT
UFO01432.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7357-RA | 1645 | CG7357-RA | 106..1230 | 9..1115 | 5135 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17808216..17808948 | 856..124 | 3665 | 100 | Minus |
| 3R | 32079331 | 3R | 17809001..17809117 | 125..9 | 585 | 100 | Minus |
| 3R | 32079331 | 3R | 17808036..17808156 | 974..856 | 475 | 96.7 | Minus |
| 3R | 32079331 | 3R | 17807909..17807978 | 1041..975 | 205 | 92.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:56:45 has no hits.
UFO01432.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:15 Download gff for
UFO01432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7357-RA | 104..1237 | 6..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:18 Download gff for
UFO01432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7357-RA | 106..1239 | 6..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:18 Download gff for
UFO01432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7357-RA | 104..1237 | 6..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:18 Download gff for
UFO01432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17808036..17808155 | 857..974 | 96 | <- | Minus |
| 3R | 17808216..17808946 | 126..856 | 100 | <- | Minus |
| 3R | 17809001..17809119 | 6..125 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:15 Download gff for
UFO01432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13633758..13633877 | 857..974 | 96 | <- | Minus |
| arm_3R | 13633938..13634668 | 126..856 | 100 | <- | Minus |
| arm_3R | 13634723..13634841 | 6..125 | 99 | | Minus |
