UFO01434.5prime Sequence
1149 bp (1022 high quality bases) assembled on 2008-09-15
> UFO01434.5prime
CAGTCGACATGGCGCATTCGACGGGCGGTACGGTGAAGACCGATGAGGTG
AACTTCTTCTTCCGGAACGAGCACGGACAAATATCCAAAATGCTGAAGCC
GGCCCAGAACAAGTCCGAAATGGAGGGAGGTAAGCCCGTGGCGGTGGTCT
ACGCCACCGGCTCATCCGCGCGCAACAGCGGAAGTGCTAGCGGCATCGGC
AACGTGGGACGCATGGGCGCCTTTAGTCAGATGGGCAGTCAAGGGCAGTT
TATACGACTGCAGGACAACGGACTGTCCATTCCAAAAACAGAAGCAGGTA
CCACCTACACCACCGTTTCGGCGCAAAAGACTTCGGGTGCTGGCAGTGGT
CATTACGACTTGCCCTTGAAGGGAGATCGCTATGTGAAGTTTACACCAAA
TCCCATAAAAATGAAATCAAAACTCCATGCCATTCAGAGCAACTCGTTGC
ACTCCATGTCGGCCTCCTCATCGTCCGTTCAAAGGAAACGCAAGCCGGAC
AAGGCAGGCAAAGGTTTGCGCCATTTCTCGATGAAGGTATGCGAAAAGGT
GGAGGAGAAGGGCAAGACCACCTACAATGAGGTGGCCGACGACCTGGTCA
GCGAGGAGATGAAGAACAATGCGTACGACAACAACTGTGATCAAAAGAAT
ATCCGACGTCGTGTCTACGATGCGCTCAACGTACTGATGGCAATCAATGT
TATTTCCAAGGACAAGAAGGAGATTCGCTGGATAGGACTGCCCGCAAATT
CGACAGAGACATTTCTGGCCCTGGAAAGAGGAAAACTGTCAGCGCCGCGA
GCGAATAAAACAGAAAAACGAAATGTTGCGCGAAATGATCATGCAGCATG
TGGCGTTCAAGGGATTGGTCGAGCGGAACAAGCGAAACGAGAGCCAAGGC
GTGGTGCCTTCCCCGAATGCCTCGATCCAGCTACCGTTCATCATCGTGAC
ACGCACAGTCCACGAAATCAACTGCAGTGTGACCACGACAGTCCGATTAC
TTATTCAAGTTCGACAAACCTTCGAATGCACCGATGACTTGGAGGTGCCT
CAGCGTATGGATCCTATTGGGACTGGATAGGGCGATGCCCGCCGGAACTT
TGAACGGAGTCAGTCTGATGCCTCAACTGGCAATCGTAGAAAGCCTTAC
UFO01434.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dp-RA | 2526 | CG4654-RA | 614..1727 | 9..1112 | 5060 | 97.9 | Plus |
| Dp-RB | 2448 | CG4654-RB | 145..1192 | 75..1112 | 4730 | 97.7 | Plus |
| Dp-RC | 1913 | CG4654-RC | 70..1114 | 75..1112 | 4675 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13226002..13226335 | 425..758 | 1670 | 100 | Plus |
| 2R | 25286936 | 2R | 13226402..13226632 | 757..985 | 960 | 98.3 | Plus |
| 2R | 25286936 | 2R | 13225466..13225625 | 75..234 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 13225807..13225938 | 293..424 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 13223046..13223113 | 9..76 | 340 | 100 | Plus |
| 2R | 25286936 | 2R | 13225690..13225751 | 233..294 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:57:08 has no hits.
UFO01434.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:48 Download gff for
UFO01434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RA | 614..1710 | 9..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:59 Download gff for
UFO01434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RA | 650..1746 | 9..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:39 Download gff for
UFO01434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RA | 614..1710 | 9..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:39 Download gff for
UFO01434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13223046..13223112 | 9..75 | 100 | -> | Plus |
| 2R | 13225467..13225624 | 76..233 | 100 | -> | Plus |
| 2R | 13225691..13225751 | 234..294 | 100 | -> | Plus |
| 2R | 13225809..13225938 | 295..424 | 100 | -> | Plus |
| 2R | 13226002..13226335 | 425..758 | 100 | -> | Plus |
| 2R | 13226404..13226639 | 759..990 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:48 Download gff for
UFO01434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9110551..9110617 | 9..75 | 100 | -> | Plus |
| arm_2R | 9112972..9113129 | 76..233 | 100 | -> | Plus |
| arm_2R | 9113196..9113256 | 234..294 | 100 | -> | Plus |
| arm_2R | 9113314..9113443 | 295..424 | 100 | -> | Plus |
| arm_2R | 9113507..9113840 | 425..758 | 100 | -> | Plus |
| arm_2R | 9113909..9114144 | 759..990 | 97 | -> | Plus |
