UFO01435.5prime Sequence
1139 bp (1012 high quality bases) assembled on 2008-09-15
> UFO01435.5prime
CAGTCGACATGCGGTCACACAGCGCAGGTCTAAAATTGTTTAAAACTCAT
TTAATTGAAATTAGCCTTAATTTCCAGCCCCCTTGCAAAAAAACGCTAGC
CAGGATGGCCAGCTTGCCAGTGATTCTGCAATGCAGGATCTGCTTGGGCG
ATTTCGAAGAGAGCCAAATGATCTGCCTGTTTGGGGATAAAGGCGAAAGT
GACCTCAGGAAAAAGTTGGAGCTGTGCTGTAGGATTAGGGTTCGCCAATC
CCCGCAGCTGCCCGAGAAGGCCTGCAACAGCTGTTGCGAATTCGTCCAAA
TGTGGTTCAACTTTCGCCAGATGTGCCTGAACTCGCAGGTCTACTGGGAA
ACAAGTTCCTCGGAGAGACCAGAGGCTCTTGCCCAGGCAAGCGATGCCGA
GTATATGTTGTATCTGTACGAGAACCTACATCTGAAACTAGGCACAGAGA
ATCAGGAGAAGGAAGAGATCACCGCAATAGAGGAGGGGGATGAACAGCAG
GAGGATCAGTCCCAGGAAGTTCTCGATTTTAACGGATTTATCATAAACGA
ATCGATTGAGGAGGACGAAGAGCCTAATACGGAAAGTCCTGAGCAGATTC
TGATTTCCCACATGGACTCCTACGTTGATGATCAACAAATGGAAGAACTC
ATTGATGATAAGGGTGAGCTTGTCGAGGAATTATCCAATGCAAACACGTT
TTATGAGGTTGAGTACGGGGACGAGGAACTTCTCATGTCAAGCGCTCCTT
CGCCACATCCCAGCTTCAATGTGGACAAACAAAAGCCGGGAAGGCCTCGC
AAACCGGACGCCGAACTGAAATTCAAACGCAAGGATATCAACGCCAAGAA
AGGGGGAACCAGCCCAAGTGCAAGGAAGAGGAGAAGTTCATGTGCATCCT
GTGCGGAAACGTCTTTTACAGAAATCTGTTTTCACGGCCCACATGATGAC
CCATTCAGAGTACAGCCCCACCAATGCGAAATATGCATTAATCTTTTCGA
CAATGGGCGATTGCAGCCACAATCGGTCGTCATACGGCGACCGTCATACA
AGTGTATGTACTGCAACGCCCTTCTACGATGCGCAGCGAACGATCCGCCA
TGACGTTCCACACCAACCGCGTTCTTAGCCTGCAGGAGT
UFO01435.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14710-RB | 1458 | CG14710-RB | 25..1171 | 9..1139 | 5110 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11620402..11621145 | 239..979 | 3525 | 99.2 | Plus |
| 3R | 32079331 | 3R | 11620114..11620346 | 9..241 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:10:05 has no hits.
UFO01435.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:13 Download gff for
UFO01435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14710-RB | 17..1146 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:01 Download gff for
UFO01435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14710-RB | 15..1144 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:53 Download gff for
UFO01435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14710-RB | 17..1146 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:53 Download gff for
UFO01435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11620106..11620344 | 1..239 | 98 | -> | Plus |
| 3R | 11620403..11621145 | 240..979 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:13 Download gff for
UFO01435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7445828..7446066 | 1..239 | 98 | -> | Plus |
| arm_3R | 7446125..7446867 | 240..979 | 99 | -> | Plus |
