UFO01437.5prime Sequence
1142 bp (1003 high quality bases) assembled on 2008-09-15
> UFO01437.5prime
CAGTCGACATGGTAATGGCAGAGATTGGTGGCCATTTGGCTCACCAGCTA
CCGTTGCACAATCACAACCACAATCAAACTGGATTACAGCCATCGCTGGT
GATGAACCATCACCTGGATTTGGATTGCCATGGACACGATGTGATAAAAA
AACAACGCCTATCTCACTGCGTCGGATGTGGCGGCCAGATCCACGATCAG
TACATCTTGCGCGTTGCCCCCGATCTGGAGTGGCATGCGGCGTGTCTGAA
GTGCCAGGAGTGCAGGCAGTTCCTGGACGAAAGCTGTACGTGTTTTGTGC
GCGATGGCAAGACCTACTGCAAGCGTGATTATGTTAGGTTATTTGGTACA
AAATGTGATAAATGCGGCAACTCCTTCAGCAAAAATGATTTTGTGATGCG
GGCCAAAACGAAAATCTTTCACATCGAGTGCTTTCGATGCTCCGCGTGTG
CGCGACAATTGCTGCCAGGCGATGAATTCGCGTTACGCGATGCCGGGGCT
TTGTACTGCAAGGAGGATCACGATGTGCTGGAGAAATCGTCGCAGAGCAG
CCTCACTTCTTCGTCGGTGGAGAGCAACAACAATATTAGCAGTAGTAACA
ACAACAACACCAACCTTAGCAATAACAACCATTCCAGCGAATTGGGTTCA
ATGTCAGATTCTGGCAGCGAATCGGGCTCACACAAAAGTATTAGGGACAA
GCGACCCTCGGGGCCATCGGATGGCAAGCCCACGCGGGTTCGGACCGTGC
TCAATGAGAAACAGCTGCATACGCTCAGAACCTGCTACAATGCTAATCCG
CGACCTGATGCGCTCATGAAGGAGCAGCTGGTGGAGATGACGAGCCTGTC
GCCGCGAGTCATCCGAGTAATGGTTCCAGAACAAGCGCTGCAAGGACAAG
AAGAAGACCATTCAGATGAAGCTGCAAATGCAGCAAGAAGAAGGAGGGTC
GCAAGCTGGGCTACGGCGCCATGGCAAGGCATCCCCATGATCGCAGTTCC
CCGGTGCGGCATGACTCCCCACTGAATCTTCAGGGCTGGAAGGTGCAAAC
ATATCAACGCAATGAAAGCCTAAGCGAACTCGCCTTCAGGCGATCTCGAC
AGCAATGGAGCGAATCAAAAACCCCACGGCCCCCACATTCAG
UFO01437.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tup-RC | 2270 | CG10619-RC | 467..1588 | 9..1128 | 5170 | 98 | Plus |
| tup-RB | 3314 | CG10619-RB | 467..1588 | 9..1128 | 5170 | 98 | Plus |
| tup-RA | 3251 | CG10619-RA | 467..1588 | 9..1128 | 5170 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18865468..18865659 | 339..148 | 960 | 100 | Minus |
| 2L | 23513712 | 2L | 18864095..18864285 | 657..467 | 955 | 100 | Minus |
| 2L | 23513712 | 2L | 18861963..18862122 | 935..775 | 755 | 99.4 | Minus |
| 2L | 23513712 | 2L | 18880657..18880795 | 147..9 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 18864392..18864525 | 469..336 | 670 | 100 | Minus |
| 2L | 23513712 | 2L | 18862180..18862303 | 778..655 | 620 | 100 | Minus |
| 2L | 23513712 | 2L | 18861783..18861899 | 1058..942 | 400 | 93.2 | Minus |
Blast to na_te.dros performed 2014-11-28 19:13:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 2557..2604 | 50..96 | 120 | 75 | Plus |
UFO01437.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:03 Download gff for
UFO01437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tup-RA | 467..1492 | 9..1036 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:25 Download gff for
UFO01437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tup-RB | 462..1487 | 9..1036 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:37 Download gff for
UFO01437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tup-RA | 467..1492 | 9..1036 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:37 Download gff for
UFO01437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18861805..18861897 | 944..1036 | 96 | <- | Minus |
| 2L | 18861956..18862118 | 779..943 | 98 | <- | Minus |
| 2L | 18862180..18862300 | 658..778 | 100 | <- | Minus |
| 2L | 18864095..18864283 | 469..657 | 100 | <- | Minus |
| 2L | 18864393..18864523 | 338..468 | 100 | <- | Minus |
| 2L | 18865470..18865659 | 148..337 | 100 | <- | Minus |
| 2L | 18880657..18880795 | 9..147 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:03 Download gff for
UFO01437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18865470..18865659 | 148..337 | 100 | <- | Minus |
| arm_2L | 18861805..18861897 | 944..1036 | 96 | <- | Minus |
| arm_2L | 18861956..18862118 | 779..943 | 98 | <- | Minus |
| arm_2L | 18862180..18862300 | 658..778 | 100 | <- | Minus |
| arm_2L | 18864095..18864283 | 469..657 | 100 | <- | Minus |
| arm_2L | 18864393..18864523 | 338..468 | 100 | <- | Minus |
| arm_2L | 18880657..18880795 | 9..147 | 100 | | Minus |
