UFO01439.5prime Sequence
1143 bp (1040 high quality bases) assembled on 2008-09-15
> UFO01439.5prime
CAGTCGACATGGTCAACAAACAGTATTCGGCCACCGATCTGGAGGCTTTT
ATGAAGATTGCCGCCAACTGGCAAAATTCCAATCACAACTTGCTGGAGGG
CGTCGACATAAAGACGGAAATGACACAGTACATGAACAGTCCTTCCATGA
ACATGTACAAGAAGAGGGAACGCACCCAGAACTGGAACCACCAGGAGAAG
AAATACCTACTCGATCTGTGTCGCAAGGACATGCGCATTATCGAGAACAA
GAGATTGGATGCCGGTCTGACCGCCGTGAAGAACAAGGCATGGAAGATTA
TCCACCAGAAGTTCTCCAATCAGTTTGGCACCGATCGCACCTGCAATCGC
CTGAAGGAACAGTGGCGTCGCATGAAGGCATGTACTCGCAACGAGATCCT
GGACTACAATAATCGCCTGGCCAGGTTTGGAGCAGAGGTGGCCGATCGCA
AGAAGCCATCTCCGTTCACCTTCGAGGTGTGGGATTTCATGCAGGAGGCG
AAGAAGGCATGCAAATCGGAGGCCCTGGATGGCATTGATTACTCTAAGAT
TCCACTGGCCTTGGAGGAGGGTTTTGAGTATCGTGAGGATTACAAATTCA
ATCCCGAAGACCACGACATGGATGACAGCCGCACACCGCCGCAGGAACTG
TGCGATGTGGACATCAAGGAGGAGGAGAACAACGAGACCTTCAACGAGAC
CTTCAACCATCACCACCTCAACCAGAGCGACATCCTTGGCAGCGGCGAGC
GTCTCAGTGTGTCGCCTAATCACAGCATCAGTCGCAACGGGATCCACGAG
GCCGAGAGTCCCGCCACGATTTCCACATCTAATGTCCTGTACTCGAGCGG
TGCCTATATGGCCCGGAGGAGGTGACATGTCCGGCTTCCAGGCCAACTTC
AACATGAACAACATATCCGCCACGCTGGAGCACTGATGCCCTCCGTTCTG
GCCATTTCCCAGTGCAGCAGCAGCGCAGCGGCGCATCACAGCACAGGCAC
AGCCCAGGTCGCCATGCATCACAGCCATAACACACACATAACACAACACG
AGACGACGAAGACGCATGAGCCGCAGTCTAGAAACGCGCAACACATGTAG
CATGTTGGCAGCGAGGAATAGCACAAAGGTTCTTGCCCACCTA
UFO01439.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| apt-RA | 2827 | CG5393-RA | 377..1512 | 9..1117 | 4900 | 97.1 | Plus |
| apt-RC | 2783 | CG5393-RC | 333..1468 | 9..1117 | 4900 | 97.1 | Plus |
| apt-RD | 2762 | CG5393-RD | 312..1447 | 9..1117 | 4900 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23597693..23598044 | 626..975 | 1550 | 98.6 | Plus |
| 2R | 25286936 | 2R | 23597059..23597320 | 117..378 | 1310 | 100 | Plus |
| 2R | 25286936 | 2R | 23597383..23597630 | 378..625 | 1240 | 100 | Plus |
| 2R | 25286936 | 2R | 23596891..23596997 | 11..117 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:22:44 has no hits.
UFO01439.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:49 Download gff for
UFO01439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| apt-RD | 341..1492 | 1..1124 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:27 Download gff for
UFO01439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| apt-RA | 367..1518 | 1..1124 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:55 Download gff for
UFO01439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| apt-RD | 304..1455 | 1..1124 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:55 Download gff for
UFO01439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23596883..23596997 | 1..117 | 96 | -> | Plus |
| 2R | 23597060..23597320 | 118..378 | 100 | -> | Plus |
| 2R | 23597384..23597630 | 379..625 | 100 | -> | Plus |
| 2R | 23597693..23598219 | 626..1124 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:49 Download gff for
UFO01439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19484406..19484520 | 1..117 | 96 | -> | Plus |
| arm_2R | 19484583..19484843 | 118..378 | 100 | -> | Plus |
| arm_2R | 19484907..19485153 | 379..625 | 100 | -> | Plus |
| arm_2R | 19485216..19485742 | 626..1124 | 93 | | Plus |
