UFO01440.5prime Sequence
1159 bp (1033 high quality bases) assembled on 2008-09-15
> UFO01440.5prime
CAGTCGACATGCTTAGTGCGGATCGGGATTCGGTGGAGGAAGAATATGGA
TCGTGCTCGGCCTGGAAATTCCGTTGCAGCGTGGACAGGTGCCCCTACAG
GACGAACAGACCCTACAATCTGGCGCGTCATGAGGAGTCCCACATTGGTA
TTACGCAGTCCAAGCTATACGGATGCCCCGTTTGCGTTTACAACACCGAC
AAGGCGTCGAACCTGAAGCGGCACGTGTCTATCAAACATCCTGGGTGCAA
AAAGCGCCCTCCGGAAGCGCAGCACAAGGATCGCAATGCCAAGTTGCAGT
GCCTGGTGATGGGATGCAGATACGAGACAAATCGTCCATACGACCTCAAG
CGCCACTTGATGGTGCACAACAATCCGGAGAAGAGCCACAGGACGTTTAA
GTGCTCCCTTTGCACCTACAGCTCCGACCGAAAGGCCAATCTCAAGCGGC
ACCACGAGCTACGCCATTCGGGCATAGAGGAGGCCATTCAAACTGCGGAG
GAACTGCGCCAGGAGATGCTGCTGGAGAAGCAAATGCTGAAGGAACATAA
GCTAAAATATCAGATCACAGAGAAACAGGATTTGAAGAATCTAAAGTTGA
AGGACCAAAAGCAGAAGGTGCAAATGCTGAGGGATCAGCAACCGAAACAA
AGGCAAAAGAAAGAACAGTTGCTGGAGGACCAGAGTCCTGTGCTGAATAA
GCAGCTGGAGCACGGAAATATTCCTTTAAAAGAAGCCCTGGTAGGCAGTA
TGAAATACGACGAGGAAAGTTTGGAATTTGTTTACGAGGAACTGCAGGAG
GAGGAGCAGCCGCCCATCATCACCATTAGCAACCCGCAGATTCTCCATGG
AGACATCCGGGATAAGCACGTCATCGCTGTCAACGTTGATGGGCCAGTTG
CGATGGTTCCAGTCATAGATCCACCGCCGGGAGCTCCAACAAATTGGAGC
TGCCCATAAAGAGCACTTCATTTCTGTCCAGCAGCAAATGGACGATAGAC
GATGAGTGGCCATGTCCCTTGCCGAGAGATCAGCAGAATGAGTTTCTGGT
GCCAATGCTGAACGGAAAGAACGCTAATAAACAATCTCGCTGACGAATCT
GCTGATGGATACGCCGGAGTCTAATTCCATAGTTCAAACCGGACATCTCG
AGGACTTAA
UFO01440.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| her-RB | 2378 | CG4694-RB | 199..1263 | 9..1066 | 5070 | 98.9 | Plus |
| her-RA | 2070 | CG4694-RA | 199..1263 | 9..1066 | 5070 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16677383..16678250 | 9..876 | 4340 | 100 | Plus |
| 2L | 23513712 | 2L | 16678318..16678515 | 876..1066 | 555 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:56:48 has no hits.
UFO01440.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:18 Download gff for
UFO01440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| her-RA | 199..1270 | 9..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:29 Download gff for
UFO01440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| her-RA | 174..1245 | 9..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:20 Download gff for
UFO01440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| her-RA | 199..1270 | 9..1072 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:20 Download gff for
UFO01440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16677383..16678249 | 9..875 | 100 | -> | Plus |
| 2L | 16678318..16678522 | 876..1072 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:18 Download gff for
UFO01440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16677383..16678249 | 9..875 | 100 | -> | Plus |
| arm_2L | 16678318..16678522 | 876..1072 | 93 | | Plus |
