UFO01441.5prime Sequence
1145 bp (1034 high quality bases) assembled on 2008-09-15
> UFO01441.5prime
CAGTCGACATGGCGCAACCGCCGCCAGATCAAAACTTTTACCATCATCCG
CTGCCCCACACGCACACACATCCGCATCCGCACTCCCATCCGCATCCGCA
CTCGCATCCGCACCCACATCACCAACATCCGCAGCTTCAGTTGCCGCCAC
AATTCCGAAATCCCTTCGATTTGCTTTTCGATGAGCGAACGGGAGCGATA
AACTACAACTACATACGTCCGTATCTGCCCAACCAGATGCCCAAGCCAGA
GGAGCTGCCCGACTCTCTGGTGATGCGGCGACCACGTCGCACCCGCACCA
CTTTTACCAGCTCTCAAATAGCAGAGCTGGAGCAGCACTTTCTGCAGGGA
CGATACCTCACAGCCCCCCGACTTGCGGATCTGTCAGCGAAACTAGCCCT
GGGCACAGCCCAGGTGAAGATATGGTTTAAGAACCGTCGGCGTCGTCACA
AGATCCAATCGGATCAGCACAAGGACCAGTCCTACGAGGGGATGCCTCTC
TCGCCGGGTATGAAACAGAGCGATGGCGATCCCCCCAGCTTGCAGACTCT
TAGCTTGGGTGGAGGAGCCACGCCCAACGCTTTGACTCCGTCACCCACGC
CCTCAACGCCCACTGCACACATGACGGAGCACTACAGCGAGTCATTCAAC
GCCTACTACAACTACAATGGAGGCCACAATCACGCCCAGGCCAATCGTCA
CATGCACATGCAGTATCCTTCCGGAGGGGGGCCAGGACCTGGGTCGACCA
ATGTCAATGGCGGCCAGTTCTTCCAGCAGCAGCAGTCCATAATCACCAGC
AGCAACTGCACCACCAGGGCAACCACGTGCCGCACCAGATGCAGCAGCAG
CAACAGCAGCTCAGCAGCAGCAATACCATCACTTTGACTTCCAGCAAAGC
AAGCCAGCGCTGTCGCGTCCTGTCAGACGACCGGAGCCGACTACACTTCA
ACAGCTCGTACTACATGCGATCGGGATGTCTGGCGCACTGCATCGCATCG
CTGTGGCCGAGCGCTGCCTCGCCGGCTCGAGTCTACGAGCATAACACCCA
AGAATGACAAGTCCGAGTCTGTGTGGCATCGCTCGCGGACTGGCCCATCG
CGTGCGAACCGGAGCGCGCCAGCTTGCACGACGACAGAGAAACCT
UFO01441.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bcd-RD | 2499 | CG1034-RD | 196..1291 | 9..1081 | 4925 | 97.9 | Plus |
| bcd-RG | 2514 | CG1034-RG | 196..1306 | 9..1081 | 4765 | 96.6 | Plus |
| bcd-RF | 2521 | CG1034-RF | 196..1313 | 9..1081 | 4695 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6757562..6758419 | 1081..247 | 3245 | 96.5 | Minus |
| 3L | 28110227 | 3L | 27540989..27541642 | 247..898 | 3110 | 99.1 | Plus |
| 3L | 28110227 | 3L | 27850078..27850731 | 247..898 | 3110 | 99.1 | Plus |
| 3R | 32079331 | 3R | 6759107..6759271 | 173..9 | 825 | 100 | Minus |
| 3L | 28110227 | 3L | 27540137..27540298 | 9..170 | 780 | 98.8 | Plus |
| 3L | 28110227 | 3L | 27849226..27849387 | 9..170 | 780 | 98.8 | Plus |
| 3R | 32079331 | 3R | 6758465..6758548 | 256..173 | 390 | 97.6 | Minus |
| 3L | 28110227 | 3L | 27540860..27540943 | 173..256 | 390 | 97.6 | Plus |
| 3L | 28110227 | 3L | 27849949..27850032 | 173..256 | 390 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:42:51 has no hits.
UFO01441.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:33 Download gff for
UFO01441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RD | 196..1308 | 9..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:31 Download gff for
UFO01441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RF | 207..248 | 9..50 | 100 | <- | Plus |
| bcd-RF | 268..310 | 51..94 | 82 | == | Plus |
| bcd-RF | 311..372 | 113..173 | 98 | -> | Plus |
| bcd-RF | 394..1358 | 174..1107 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:07 Download gff for
UFO01441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RD | 196..1308 | 9..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:07 Download gff for
UFO01441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6757545..6758416 | 250..1094 | 96 | <- | Minus |
| 3R | 6758472..6758547 | 174..249 | 100 | <- | Minus |
| 3R | 6759107..6759271 | 9..173 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:33 Download gff for
UFO01441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2583267..2584138 | 250..1094 | 96 | <- | Minus |
| arm_3R | 2584194..2584269 | 174..249 | 100 | <- | Minus |
| arm_3R | 2584829..2584993 | 9..173 | 100 | | Minus |
