UFO01444.5prime Sequence
1130 bp (1021 high quality bases) assembled on 2008-09-15
> UFO01444.5prime
CAGTCGACATGACGACCATGTCGCCGCCGTCCCCCATGGACGCCTTGTGC
CGCGTGTGCCACACAGCATCGCCGCGCTGCCTGCCGCTCTTCAAACCGCT
CGACGATCCAATTTCCGGCAAACCAGCGACGCTGGCCAGCATTTTAAGCT
ACTGCAGCGGTCTGGAGATCCTAGAGGCGGAGCTCTTCCTGCCCCACCAC
ATCTGCCCGGACTGCGTGGCCAAGTTGCGGCTCTCGCTGGAATTCAAGCG
GAGTGTCCATCGCATGGACAGAATTCTGCGGCAGAGTCATGCGGACTTTT
GCCGCAGCAAAAAGATCAGCGCGGTGAATACTAGGGCCAGGCTGTCAACC
GAGATTCCGGAGGATTTTGTACTCGTGCTCGATGACCAGGAAGTGACTGA
ATATCCAGCAGAAACGATACGAGATGAGGAGCAACTCCTGGTCGTAGAAT
CAGATGAGGCGGAGAGCCGGCTGGAAGCGCCAATTGTACAGGAGGAGAGG
CTGGATATTGCACTGGAACAGCACGAAGACGATCTCTGCGAGATTGTCGA
CGATCCGGATCCGGAGCAACGTAGGAGCAGGTTAGAAAGATCCGAGCCAG
CGCTGCAATGTCCCATTTGCGGCAAACAACTGGCTAGGAAGCGGACCTTT
CAGTACCACATGAGGCTACATGGCCAGCCAAAAATTCGCCAAGAAGACAA
CGACCACTGCATTGAAGAGTGCCTCCAAGTGGAGCCCGTTTTGCACGCCA
AAGCTGGCGAAGATGTCTACGAGATTGTGGAGAAATCAGCACAGACTTCG
GCGACGCAGAAAACTTTGCCCAGTGGAAGCCGGCCTTGGAAACCCCTCAA
TCCCTCCCTACAGTGTAAAATCTGTGGCAAGCTGCTAAGCAACAACAACT
CCTTCAAGTACCATATGCAGCTACATGGCACGGCACGCCCTACGTTTGCA
CATCTGCGGAGAGTCTTTAGACGCGAACGCCCGCGACGGCATGTCACGCT
GCACGATCGTACATCGGACAGGTGCCCACTGCTCAGGTCTACGGCAGGCG
TCCTTCGCTGGCCAACACTTCTATCCCGCGGAATCAGCCATCGAGTGCAC
ATCTGCGGCAAGAGCTAACAGAATTCGGCT
UFO01444.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2712-RA | 1804 | CG2712-RA | 96..1230 | 8..1120 | 4975 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2732564..2733170 | 8..614 | 3035 | 100 | Plus |
| X | 23542271 | X | 2733231..2733485 | 615..869 | 1260 | 99.6 | Plus |
| X | 23542271 | X | 2733556..2733703 | 870..1011 | 415 | 93.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:03:37 has no hits.
UFO01444.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:35 Download gff for
UFO01444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2712-RA | 91..1243 | 1..1130 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:34 Download gff for
UFO01444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2712-RA | 182..1334 | 1..1130 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:16 Download gff for
UFO01444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2712-RA | 91..1243 | 1..1130 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:16 Download gff for
UFO01444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2732559..2733170 | 1..614 | 99 | -> | Plus |
| X | 2733231..2733485 | 615..869 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:35 Download gff for
UFO01444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2626592..2627203 | 1..614 | 99 | -> | Plus |
| arm_X | 2627264..2627518 | 615..869 | 99 | -> | Plus |
