UFO01445.5prime Sequence
1165 bp (1002 high quality bases) assembled on 2008-09-15
> UFO01445.5prime
CAGTCGACATGACAGCAAAACGTGATAAGGATTACTCAAAAAATAAATCA
GCACCTGGCATCGGATTCACCGCCGCCGGCTCAACTAATGGCAGCGGCAT
AAAGTCCATCGGGCTGGTGAGCTCAACGCAGAATGTGACTTCGTCGCAGG
ACATCAGCAAGCGGACAAACAAACCACTCATGGAGAAGCGCCGGCGGGCG
CGAATCAACCAGAGCCTGGCCATCCTGAAGGCCCTCATCCTCGAGTCCAC
CAAGACCCAAAATGCCAAGAACGGCGAGGGCCAGGCGAAGCACACCAAGC
TGGAGAAGGCGGACATCCTGGAGCTAACCGTTCGCCACTTTCAGCGGCAT
CGCAATCTCGACGATCCCACGGTTAACAAATACAGAGCTGGTTACACGGA
CTGCGCTCGCGAGGTGGCTCGTTACCTGGCCACCCCGGAACCGCCGCCCA
TGGGCACCATGCCCACCTTGGCGGAGCCCGGCTCCAAGGCGCGACTGCTG
CGCCACCTGGACCAGTGCATAGCCGAGATCGACGTGGAGATCTGTCCCCA
TTCGACGGCCGCGTTTGCCGAAAGCCCCAGCAGTAGCAGTTGCTTCGACC
TGAATCACGGGAAGAAGTCGCAGCCCGAGGAGCATTCGCTGGACTACAGC
AGCCAGGATTCGAATCCAGTGGACTACAGCAAGGGTCTGAAAATGGTAGC
CGCTGAGCAGAGGACGCTGCCCGTCACGCCAGCACCCCAGGATGAGAACA
ACAATCGTGGACTCCAGGCGCAGGCGCAAACTCCGATACCAATACAGGTG
CAAAGCCAGACACAAGGCCAGACGTCGCCGCATGTAGATGCCGTCGCTCC
CAGCGAGCTGAGCTACGAGGAGGATCGCAACAAGATGTGCGCTAATGTCC
TGGAGCAGTACAAGCAACAGCTTAAGGCGCACGTGCAGCAGCAACCAGAG
TCCGCACGGAGTCTGGTCTGCCGCCCCACTATGTCAGCTGGCAGCGGCCT
TGGCTTATGCCAGCGCTGGTGATCGGATTGCTACCGGACGGATTTGAGCG
TGATAGAAGTGCACGGGTCACCACATTTGGCCGGCAAGTGAGTCCCAGTT
TCGGGAGGCTTGGAGGCGTGCCATGGTCGCGTGGCGGAACACGGCTTAGC
CAAGCATGGGCTGTG
UFO01445.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Side-RA | 2188 | CG10446-RA | 348..1526 | 9..1165 | 5070 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19029301..19029935 | 370..999 | 2930 | 98.9 | Plus |
| 2L | 23513712 | 2L | 19028800..19029112 | 57..369 | 1565 | 100 | Plus |
| 2L | 23513712 | 2L | 19028057..19028106 | 9..58 | 250 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:34:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6847 | 900..950 | 111 | 68.6 | Plus |
UFO01445.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:13 Download gff for
UFO01445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Side-RA | 343..1494 | 2..1136 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:36 Download gff for
UFO01445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Side-RA | 341..1492 | 2..1136 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:03 Download gff for
UFO01445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Side-RA | 343..1494 | 2..1136 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:03 Download gff for
UFO01445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19028052..19028105 | 2..57 | 92 | -> | Plus |
| 2L | 19028801..19029112 | 58..369 | 100 | -> | Plus |
| 2L | 19029301..19030086 | 370..1136 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:13 Download gff for
UFO01445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19028052..19028105 | 2..57 | 92 | -> | Plus |
| arm_2L | 19028801..19029112 | 58..369 | 100 | -> | Plus |
| arm_2L | 19029301..19030086 | 370..1136 | 95 | | Plus |
