UFO01446.5prime Sequence
1117 bp (1002 high quality bases) assembled on 2008-09-15
> UFO01446.5prime
CAGTCGACATGAAGAAGATGCACGGCATCACCAAGGCAGCGGCGCCCCCA
CGGGATTACCCTTGCACCGAGTGCGAGAAGGTATTCCGCTGTCCCATGGC
GCTCAAGAAGCACATGTACAAGCACGACGGCAAGGAGTTGCCTTTCCCCT
GTAACATCTGTGGCAAAAGGTTCGTAATCAATAGTGCTCTAAAGGATCAT
CTGATGCGGCATGCGGGCATTAAGAACTACGTGTGTCCGTACTGTGGCGT
GGGAAAAACCACCAGGCAGGAATGGAACACACACATACTGACGCATACCC
AGGAGAAGAAGTTCAAGTGCCACATATGCGAGCACGCATCGCACAATAAG
CAGAGCCTGGCCAACCACATTAAGATCGTGCACGAGAAGATCAAAAACTA
TGCGTGTCAATACTGTGGAAAGACCTTTGGCAAGTCACACGCCTGCAAGA
TCCACGAGATGACGCACACGGGGGAAAAGCGCTGTGAGTGCAAGGTTTGT
GGAAAGAAGTTTCTCTATCCTAAGAGTCTGACCAAGCACTTGAAGACTCA
TGAGAAGCGTGTGCTTCGTGCTATTGAGACCTACCGCCAGCGGCAGGTGG
AAATGGGCGAGACGCCTGGTGAACAGTTCGACAATCCACCCGCGCCACCA
GTTGAGGGCATATCCATTGAGCCGATCATGTCCCGAAACGCTGCCGACGA
ATTGCTTAAGGTGTGCGCCGAATCCGTGGCCACCATTCCCAAAGATCCAC
GCCGTGTACAACGAGTGGATCTGGCGCAGTTGGCTGGCACTGCTGTGAAC
CCCATACCCTCTGTTTCAGTGCCGTCGTGGTCGCCGCAGTGAACTTTACC
AAGAAGGAGGGCAAACATATCTGCTACGGTTGTGTCAGGATTCAACAATA
TCCGGAAACATGAAGCGGCACCTATAGATCATCCACGAAAGGTCAAGATT
TTGCCTGCCGCTTTGCCCAAGATTCGCAAAGGCTCAAACGTTGAGCATCA
CGAGTGATTCATACGACGACGAACCCTTTGGATGCAAGACCTGCGGCACC
CATTTCCGCCAAGGAACGCCTGACGCCACCAGCGCACCAGAACCGTCCAC
CCGTCCATCCCAGTTAG
UFO01446.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10274-RB | 3034 | CG10274-RB | 1108..2225 | 7..1105 | 4935 | 97.1 | Plus |
| D19A-RA | 3233 | CG10269-RA | 1217..1766 | 7..556 | 950 | 78.8 | Plus |
| D19B-RA | 2685 | CG10270-RA | 1153..1662 | 52..561 | 840 | 78.8 | Plus |
| D19A-RA | 3233 | CG10269-RA | 2002..2198 | 777..968 | 260 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6180179..6180668 | 496..7 | 2450 | 100 | Minus |
| 3L | 28110227 | 3L | 6179538..6180117 | 1061..493 | 2165 | 95.5 | Minus |
| 3L | 28110227 | 3L | 6187297..6187846 | 556..7 | 935 | 78 | Minus |
| 3L | 28110227 | 3L | 6183199..6183708 | 561..52 | 840 | 77.6 | Minus |
| 3L | 28110227 | 3L | 6190735..6191126 | 105..496 | 535 | 75.8 | Plus |
| 3L | 28110227 | 3L | 6186964..6187061 | 873..777 | 185 | 81.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:01 has no hits.
UFO01446.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:20:03 Download gff for
UFO01446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10274-RA | 1157..2281 | 1..1108 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:20 Download gff for
UFO01446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10274-RB | 1041..2165 | 1..1108 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:01 Download gff for
UFO01446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10274-RB | 1103..2227 | 1..1108 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:01 Download gff for
UFO01446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6179484..6180115 | 495..1108 | 94 | <- | Minus |
| 3L | 6180181..6180673 | 1..494 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:20:03 Download gff for
UFO01446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6172584..6173215 | 495..1108 | 94 | <- | Minus |
| arm_3L | 6173281..6173773 | 1..494 | 99 | | Minus |
