UFO01447.5prime Sequence
1143 bp (1013 high quality bases) assembled on 2008-09-15
> UFO01447.5prime
CAGTCGACATGTCGCTGCCAATGAATTCGCTGTATTCGCTCACCTGGGGC
GATTACGGCACCAGCCTCGTATCGGCAATCCAATTGTTGCGCTGCCATGG
CGACCTCGTCGATTGCACGTTGGCCGCCGGCGGGCGGAGTTTTCCCGCCC
ACAAGATAGTCCTGTGCGCCGCCTCCCCCTTTCTGCTGGACTTGCTAAAG
AATACACCATGCAAGCATCCAGTGGTTATGTTGGCTGGCGTCAATGCGAA
CGATCTGGAGGCGCTGCTGGAGTTTGTGTACCGCGGAGAGGTGAGCGTGG
ATCACGCCCAGCTGCCGTCGCTACTGCAGGCTGCCCAGTGCCTGAACATC
CAGGGACTGGCACCGCAGACGGTTACCAAGGACGACTACACCACGCACTC
GATACAACTGCAGCACATGATTCCACAACATCACGACCAAGACCAACTGA
TTGCCACGATCGCCACGGCTCCACAGCAAACGGTTCATGCCCAGGTGGTG
GAGGACATCCATCATCAGGGCCAGATTCTCCAGGCAACGACCCAGACCAA
CGCAGCAGGACAACAGCAGACCATTGTGACAACCGACGCGGCTAAACATG
ACCAGGCAGTGATTCAGGCTTTTCTTCCGGCACGCAAACGCAAACCACGC
GTAAAGAAAATGTCACCTACGGCACCGAAAATAAGCAAAGTTGAAGGAAT
GGATACGATTATGGGCACACCGACCTCTTCACACGGCTCTGGATCCGTGC
AGCAGTGCTTGGCGAAAATGGAGCCGAGGGCCAACTGCTATCATCCACAC
CGATCATCAAGAGCGAGGACAAAGGTAGAGACTATTGTGACCATGGACCC
CAACAACATGATACCGGTAACGTCGGCTAATGCGGCAACTGGCGAGATAA
CACCAGCACAAGAGCCACTGGCTCATCTGGCGGCAATACAAGCGCGTCCT
TTCCACGCCAAAGGCAAACGCGCTAAACATCCGCCCGGAACAGAGAAACC
ACGTTCACGATCCACATCTGAAAACTGCTACTTGCCAATTGCTATGCTGT
CATCGTCAATCCCGAACTGGCGGCGCCCATCTTCGGCTGCGCATTTGGCC
AACCGGCGTGAAAGGCAAAAAGTAGTCGGTACAGATATCACCT
UFO01447.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trl-RK | 3145 | CG33261-RK | 357..1474 | 9..1112 | 5050 | 97.8 | Plus |
Trl-RJ | 3814 | CG33261-RJ | 242..1359 | 9..1112 | 5050 | 97.8 | Plus |
Trl-RI | 3806 | CG33261-RI | 357..1474 | 9..1112 | 5050 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14754085..14754552 | 666..199 | 2340 | 100 | Minus |
3L | 28110227 | 3L | 14753631..14753966 | 996..667 | 1365 | 97.9 | Minus |
3L | 28110227 | 3L | 14756904..14757095 | 200..9 | 960 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:42:17 has no hits.
UFO01447.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:14 Download gff for
UFO01447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trl-RK | 357..1443 | 9..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:22 Download gff for
UFO01447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trl-RC | 354..1440 | 9..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:52 Download gff for
UFO01447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trl-RI | 357..1443 | 9..1085 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:52 Download gff for
UFO01447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14753631..14753966 | 667..996 | 97 | <- | Minus |
3L | 14754085..14754550 | 201..666 | 100 | <- | Minus |
3L | 14756904..14757095 | 9..200 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:14 Download gff for
UFO01447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14746731..14747066 | 667..996 | 97 | <- | Minus |
arm_3L | 14747185..14747650 | 201..666 | 100 | <- | Minus |
arm_3L | 14750004..14750195 | 9..200 | 100 | | Minus |