UFO01450.5prime Sequence
1111 bp (1012 high quality bases) assembled on 2008-09-15
> UFO01450.5prime
CAGTCGACATGGACACACCGGAGATCCACGTAAATATAAGCTCGCAGACT
TGCCGCGTCTGCCTGGAGACGCACGAGACCAATCTGTATGTCCACGATGA
AATCAAATACAACGACCTTAAGTTGGAGCTCTGGCAGTTGTTGGAGGCAG
TTTCCAAATTGAAGTGGACATGGACGGACCCAAATCTGCCTATGCATCTG
TGTCAAAATTGCGCCCGCCGGCTGATCGGCGCCTATGAGTTCATCGTCGA
AGTGGAAAACGCCCATGAAACTTTACAGAATCTCTTCGAGCAACAGGAAG
TTGCTGCCAAGCCGGATGAAGTTCATGTGGATGTCGTGGAGCTTATAGAC
CAAGACGATGTGGTCAGTATGGCACAATACCTGTCCACGTCTTTTGCCGA
ACAGCACGTGGAAATGGAGGAGAAGTATGGAGACCAAGACTGTTCAGCTT
TTACTTCAGATGTGGGCGAAGAGCCACTCTATGCGAGCGAGGATCGTGAT
GATGAGCCTGAAGACTCCTTTCAGCTGAAGCCTCGGCCAGATGAAATAGA
AAACAGAGAATTGTCGCGACCTTCCCAGCTGGGCAGTCGTTTGAACCATT
CGGCGAACTTCATCTACAAGTGCGCCGTCTGTCCGCGTGTCTTTGCCAAA
AGTGAATCTCTGACTCGTCATTTTTCCCAAGCCCACAAACTGACAGCGGA
CGTGGCCGCCATGAAGCTGGCCAACGAGAGCTGCGGCACCGGTCTGCTAA
CCTGTGAGCACTGTCCGCGGACATTCAAGCGTCAGGACACACTCCGGCGA
CACATGCAGGCATTCCATCCCGACGCAATCGCATTGGAACCCGAAGAAAC
GACGGACAATTCCGCCCGAAACGCATAGCTAAGCGGCGAGACTGTCCGCA
CTGTGCCTGAGCTTTCCCGTATCTAGCCTACCATCCACATCGCGACTACG
GCGATATCCGTACAGTGCGATCATGCGAGAGCCTTTCGCGCAGCAGATCT
AGTCTCACATGCGTCAGCCAACCGGCGAGCGTCCAGTGATGCAAGATCTG
CTCAAGAAGTATTTCGGACAGCTGGCGCGAACATGCCATGCACTGTCAGC
GTAATCCTGCA
UFO01450.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3281-RA | 1870 | CG3281-RA | 93..1198 | 8..1086 | 4865 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11961725..11962505 | 940..163 | 3755 | 99.6 | Minus |
| 3R | 32079331 | 3R | 11962557..11962713 | 164..8 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:42:58 has no hits.
UFO01450.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:39 Download gff for
UFO01450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3281-RA | 93..1176 | 8..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:40 Download gff for
UFO01450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3281-RA | 89..1172 | 8..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:10 Download gff for
UFO01450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3281-RA | 93..1176 | 8..1071 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:10 Download gff for
UFO01450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11961577..11962503 | 165..1071 | 97 | <- | Minus |
| 3R | 11962557..11962713 | 8..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:39 Download gff for
UFO01450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7787299..7788225 | 165..1071 | 97 | <- | Minus |
| arm_3R | 7788279..7788435 | 8..164 | 100 | | Minus |
