UFO01451.5prime Sequence
1137 bp (1022 high quality bases) assembled on 2008-09-15
> UFO01451.5prime
CAGTCGACATGACGCTGGACAGCTACAACATCTTCAACGATGAGTACTTG
TTCAACATGCCGCTGTCGCCGCTGCCAAAAGTGCTCGGCAACTTTGAGAC
CGGCCAGAGTGTTCTCACACTGACGACGCCCACGTTGACGCCGACCACCA
CGCGCAACATCGAGGACACACTGGGCCACTTGCTCTCGGACACGCAGACC
GATCGTGTGGCTGGTTGCGCGGGATTCGCAGTGCCAAAGGTGCTACCCAA
CGCCATTGATGTCCTGGGCATGGGTATTCCCACCGGTGTTTCGTCGCTCC
CACTTCAGCAGACATTCGATTTGAGCCTGGGGCAGGGCAGCGAGTCCGAG
GACTCCAACGCTTCGTACAACGATACGCAGATGAACGAGGAGCAGGACAC
GACCGATACTTCAAGTGCCCATACGGACAGCACCTCGTACCAAGCTGGCC
ACATCATGGCGGGCAGCGTGAACGGCGGCGGTGTCAACAACTTCTCCAAT
GTCCTGGCCGCCGTGAGCTCTAGCCGCGGATCGGCGTCGGTGGGCAGCAG
CAACGCGAATACCTCAAATACGCCGGCTCGTCGTGGCGGCGGCAGACGCC
CCAACCGGTCGACGAACATGACCCCGGAGGAGGAGCAGAAGCGGGCCGTG
CGCCGGGAGCGGAACAAACAGGCGGCGGCCCGTTGCCGCAAGAGGCGCGT
GGACCAGACCAACGAGCTCACCGAGGAGGTGGAGCAGCTGGAGAAGCGGG
GCGAGAGCATGCGCAAGGAGATCGAGGTGCTGACGAACAGCAAGAATCAG
CTGGAGTACCTTCTGGCCACCCACCGGGCCACCTGCCAAAGATTCGCTCC
GACATGCTGAGCGTGTCACCTGCAACGGTCTGATTGCCCGGCCGGACTCC
TGAGCGCCGGGAGCAGCGGCAGCGGCGCGAGCAGCCACCACACCACACAG
CACGACAGCAGCAACGGCACGATCACCGGGCATGACGCCACGCTGACTCC
ACGGGAGGAGCATTCACCCTTGGATCTCAGCGGCGGCGAACATCGATAGC
TGCTGATGCAATCAGACGAGCCACTCGATGGCGCCATCGCATTCAGATCA
GCTGGAACAAGAACGTTCACCGCCCCAGCCAGGGCCA
UFO01451.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kay-RB | 3194 | CG33956-RB | 465..1560 | 9..1089 | 4950 | 97.7 | Plus |
| kay-RF | 4574 | CG33956-RF | 1919..2940 | 83..1089 | 4580 | 97.6 | Plus |
| kay-RG | 3738 | CG33956-RG | 1084..2104 | 84..1089 | 4575 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29791787..29792479 | 412..1089 | 2605 | 96.1 | Plus |
| 3R | 32079331 | 3R | 29791392..29791720 | 83..411 | 1615 | 99.4 | Plus |
| 3R | 32079331 | 3R | 29783073..29783147 | 9..83 | 375 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:47:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1082..1171 | 908..1001 | 126 | 63.8 | Plus |
UFO01451.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:09 Download gff for
UFO01451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kay-RB | 458..1579 | 1..1106 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:42 Download gff for
UFO01451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kay-RB | 456..1577 | 1..1106 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:26 Download gff for
UFO01451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kay-RB | 458..1579 | 1..1106 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:26 Download gff for
UFO01451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29783066..29783147 | 1..83 | 95 | -> | Plus |
| 3R | 29791393..29791720 | 84..411 | 99 | -> | Plus |
| 3R | 29791787..29792498 | 412..1106 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:09 Download gff for
UFO01451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25608788..25608869 | 1..83 | 95 | -> | Plus |
| arm_3R | 25617115..25617442 | 84..411 | 99 | -> | Plus |
| arm_3R | 25617509..25618220 | 412..1106 | 96 | | Plus |
