UFO01454.5prime Sequence
1125 bp (1020 high quality bases) assembled on 2008-09-15
> UFO01454.5prime
CAGTCGACATGATCTGTCGCCTGTGTCTGAACGCGCTCGACGAGCAGAGC
GCGGTGCTACTGTTCGACGGCGCCGGCGGAGCCAGTGCGCCCGCACCGGA
TGACGAGGACGACGGCAAGGCGATGCCAGAGAGCTACCTGGTCCAACTGA
TCTCGATTCACTTGTACCTCTGCCTCTCCCGCGACGACGCCATCTCCACC
TGCATCTGCACCGAGTGCTGCTCGCAACTGGAGAGCTTCCACAACTTCTG
GAAGCTGGTGGAGCTAAAGCAGACGACGCTGTGCAGCCAGTTTTTGGCTA
TCGATTGTGATGTCAACTGGTCGGAGGATGGCAGCGAAACGCAGTTGGAT
GCGCAACCGCAATTGCTACTGGAGCCGGCGGAGGAGCCCAAAGTGGTGAC
TCCCACAACGGCGAATAAGTTTCCCTGCATGTTCTGCGAGAAGTCATTTA
AGATGCGCCGCTACCTGGAGGAGCACATAGCCACCCACACCGGCGACCGA
CCCATTGCGTGTCCCTACTGCGAAATGGCCTTCCGCTGCCGTTCGAATAT
GTACACCCATGTGAAGAGCAAGCACACCACGCAGTGGCTAAAGGCTCGCG
AAGAGCGGGATGCGGCCAAGTCGAATCAGAATCACACGACGCCGGAGGAG
ACCGCTCCAGCAGTTTTAGTTCCTGTCCCTGCTCCTGCTCCTGCTCTTGC
TTCCGCTCCTGCATCTTCTGCTTCTCCTGGAAACACAGTAAATCCCGCTG
CTACTGCTACTCCTGCTTCGTCTGCCACACCCACCACCAATCTCGCAGCA
GCTCCTTTACCATCGCCACCAACTGTCCAACAGCTGCCGCTGTCGGTAAT
CAAGAGTCAACCCAGCGAGGCCATGAACCTCACCATAACCAGACACCGCC
ATCCGGTAGTCGGGGCTCACGCAATCGATCCAGTCGCCGAAGACGCACTC
GCCCAAAAAGTCAGCACACGGAGGGCAGCGATGTTAGCGACGAGATTCGC
CCGCAAAAAGGCTCAGGAAACGAGCTCATACTGTAATTATAATGCGTAGC
CGCTGCTGTCTGGCAGCCGCCTCGCTACGGCATCCGCCAGGAAAACCGGA
TGCCTGCACCACGCCTGGTGGCGAC
UFO01454.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12219-RA | 2018 | CG12219-RA | 87..1201 | 9..1108 | 5120 | 98.2 | Plus |
| CG2889-RB | 2098 | CG2889-RB | 435..524 | 183..272 | 180 | 80 | Plus |
| CG2889-RA | 2173 | CG2889-RA | 510..599 | 183..272 | 180 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6300054..6300968 | 1077..174 | 3995 | 97.8 | Minus |
| X | 23542271 | X | 6301035..6301199 | 173..9 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:22:50 has no hits.
UFO01454.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:54 Download gff for
UFO01454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-RA | 87..1213 | 9..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:47 Download gff for
UFO01454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-RA | 72..1198 | 9..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:00 Download gff for
UFO01454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-RA | 87..1213 | 9..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:00 Download gff for
UFO01454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6300005..6300968 | 174..1120 | 97 | <- | Minus |
| X | 6301035..6301199 | 9..173 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:54 Download gff for
UFO01454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6194038..6195001 | 174..1120 | 97 | <- | Minus |
| arm_X | 6195068..6195232 | 9..173 | 100 | | Minus |
