UFO01457.5prime Sequence
1091 bp (956 high quality bases) assembled on 2008-09-15
> UFO01457.5prime
CAGTCGACATGGAAGCCGACATAACGCCCCTGGCGGAAACCAACGGAGAG
CAGCGCCAAAATCCCCAGGAAAGTGCTCAAAACCAAGAGCAACCGCAACC
GCGGCAGGATTTGGCGGGCAAGTCGGTGGGTTCCGCTGATGATGGCGTCT
CCGGAACTGTGGGACAGATTATGGATTACCTCGAGGACGATGCCGGTGCA
ACTGCCGACCAGGACGCGGAGATGGGCGAGGCAGAGTATCTGGATGGCGA
GATGCCGCAGGAGGATGAGAGCGAGACTCCGCAAACGGAGAAAGCCAATG
AAGGTTGCCAGGAATCAAGCAATAAGAAGGATTTGCAAGAATCTGCAGCT
AAAGATGATTTTTCCAAGGAAAAAAGTGGAGAGGATGGTGAAAAAGACAC
CGACAAGGAGAAGAAGGCAACTCATTTACATGAAGATAACAACGATGATG
CCGAAAAGGATGGCGACGAGGCCGACGCAGAGGATGAAGACGATGTAAAG
AAGCCAGAAGATGAGGATGGCACCGAAGAAGGCGACGAGGCCATTGAAGA
AGATGAGGACGCTCTCGATGAAGATGAGGATCCCAACGAAGAAGTCGAGG
AAATTGAACCAGATTTCGAGACTGGCACCGATGCAGAAGGTGAACTAATC
ACTGGCGATGAGCCGGGCGATCTGGCCGATGTGCCCATTAGGGAGCGCAA
GAAAGAGGAACCCGTGGACGAAGACCAGTGCCGCGTTTGCACCAGCAAGG
AAGAGCTAGTCTGCCTGTTTAAGAAGCAAATCGATGCCACGCCCGCGGAC
ATGCTGCTGGTCATCTGTCCTAATGTCTCGATTTTGCCCAAGGACTTTAT
GCCGCATTTCATATGCACCAAGTGCATGGGCAGCCTTACCATTGCCATAC
AGCTGAGAAGCAGCTGGAGATCACGGACCAGAGCTGCGCAAGCGTTTGTC
CCGAGCAGGAATAAGTGCGAGACCCGCGGCTATGTGTCTAGACCCCCTGT
CACCGATTCCAGTGAGGATGAAGATGAGCTCATGATGAGTCAGCTCCGAT
GTATCGGGACCTGATGCTGACGTCAATTCTGCGATTCGATG
UFO01457.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12391-RA | 2378 | CG12391-RA | 292..1333 | 9..1040 | 4870 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11148657..11149513 | 1031..184 | 3755 | 97.8 | Minus |
| 2R | 25286936 | 2R | 11149600..11149777 | 186..9 | 890 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:34:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 260..314 | 485..539 | 113 | 67.3 | Plus |
UFO01457.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:18 Download gff for
UFO01457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12391-RA | 284..1333 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:49 Download gff for
UFO01457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12391-RA | 272..1321 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:06 Download gff for
UFO01457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12391-RA | 284..1333 | 1..1040 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:06 Download gff for
UFO01457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11148647..11149511 | 186..1040 | 98 | <- | Minus |
| 2R | 11149601..11149785 | 1..185 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:18 Download gff for
UFO01457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7036152..7037016 | 186..1040 | 98 | <- | Minus |
| arm_2R | 7037106..7037290 | 1..185 | 97 | | Minus |
