UFO01458.5prime Sequence
1116 bp (969 high quality bases) assembled on 2008-09-15
> UFO01458.5prime
CAGTCGACATGATGAATAGCAAGATCGCCGAGGTAGTGGTGCTCAACTGC
CGGACGTGCACGCGTGCCTGCAAGCTGCACAAGCCGCTGCAGGAGGAGAT
CGATCTGGGTTCGGAGGGCAGCACCACGCTGGCCAGCATGCTAAACTACT
GCACGGGACTCTCGTTCGAGCCGCAAGACGGCGCCGCCATGCCGCAGCAC
ATCTGCCTCCACTGCCTGCAGCTGCTGGAACAGGCGTTCAACTTCAAGCG
CATGGTCATCGATTCGGACGAGCTGCTCCGCCTGGGCCTGGACGAGGCGC
GCTGCTCCAGCTTTCACGAGAGTCAGACTCATAGCCCCAACCAGAGCCAG
CAGCACGACCAGCAACAGCAGGCGTTCGACTCCACCGAGGAGTACGTCAT
GATCGAGATGCTCAACGAGGAGCAGGAGAACGTCGCCAATTTGGATGAAG
AACTAGCAGAGGAGGATCGTCGCATCTTCGCGATGACCGTGGATGAGGAG
GAGGAGTTTCTCACCGAGGAGGTGGATCAGGATGACGAGCTGTCGGAGGA
GGAGCACCAGCTGGCACAGTCGGGCGACCAGCAGGAGGAACACATCACTA
TGGAGAGCGTGCATGAGTTTCAGCCCGCCGAAGTGGAGTATGTGACCATT
AAGAATGAGTTCGAAACGATCGTCACGGAGGAGGATGAGTTCGAGGTGAT
GAACGACTCCGGCGCCCACGACGCCATACTGGACTGTCAGATGATTGTGA
TACCCGCCGAGGGAGCCATTGACGAGGTCATCGGCGAGTGAGACCCTCGA
ATTGGAGGGGGATGGGCGCGAGGAGCATCTGCTGCCGGAGGCGGAGGATG
TCTGCGAAGATGAGGACCAGCTGGAGGAGTCGCTGGACTCAGCGCCGCCG
ACCGCTGGCGAGCGCTGCCGTACGTGTGCAACGTGTGCAGAGGCGTTTCC
GCCAGCATTGCCGTTCTCAACCAGCACATGCCGCTCCCACGTGGACGAGA
AGCAATACGAAGTGCGAGGAAGTGTGCAGCGTCTGAAGCCCTACGCCACT
ACAAGGAACCATGCTGACCACCCAATGTCAGGCCCCACCCAGTGCAGCAT
TGCCGCCCCCTCCTAT
UFO01458.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dwg-RA | 2002 | CG2711-RA | 134..1228 | 8..1100 | 4975 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2727831..2728263 | 8..440 | 2165 | 100 | Plus |
| X | 23542271 | X | 2728545..2728934 | 441..831 | 1905 | 99.7 | Plus |
| X | 23542271 | X | 2728996..2729225 | 831..1059 | 605 | 91 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:24 has no hits.
UFO01458.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:16 Download gff for
UFO01458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 131..1244 | 1..1116 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:41 Download gff for
UFO01458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 129..1242 | 1..1116 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:58 Download gff for
UFO01458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 131..1244 | 1..1116 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:58 Download gff for
UFO01458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2727828..2728263 | 1..440 | 99 | -> | Plus |
| X | 2728545..2728934 | 441..831 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:16 Download gff for
UFO01458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2622578..2622967 | 441..831 | 99 | -> | Plus |
| arm_X | 2621861..2622296 | 1..440 | 99 | -> | Plus |
