UFO01459.5prime Sequence
1115 bp (1018 high quality bases) assembled on 2008-09-15
> UFO01459.5prime
CAGTCGACATGCCACCGTTGAAAACATACCAGATACACGAATACAATGGC
AATACCAGTCCGAATGCGAATGCCAATCAGAACGCCAATCAGAATCCCAC
CGGCGGCGGCGGCGACGGTGACTTCTTTGGCCAAAATCTGGGATCTGGAG
CCACAGCGGCCAGCCATCGCACAAACCTGCCCTCCTACTGCAACGCCCAA
TATCCGTTCAAGGTGCTTTCCAATCTCAACCAACTGCGCGAGCAGTCCCG
TTTCTGCGACGTGGAGATCATCGCCGGAATGGCAACATTGAGTGCCCACC
GGGCTGTCCTGAGTGCAGCCAGTGCCTACTTCGAGGCCATGTTTCGACCC
GAGCTCGGGTTAAATGAGGTCAAGCAAAAATCCGTTGTGCTGCACACAAT
CGACGGCGATATCCTGCACATCCTGCTTGACTTCATCTATACGGGTCGCT
GCGAAATCACCCAGTCCAATGTCCAGGAGCTCCTGGCCGCCGCCGACATG
CTGCAGCTAAACGAGGTGGTCGACGGGTGCTGCGAGTTCCTCTGCCGCGA
GCTGCACGCCTCCAATGCCCTGGGCATTTTACGCTTCGCCGAGGCCCACA
ACTGCGAGTCGTTGGCCAAGAGTGCACTGAACTTTGTCCACGCGAATTTC
CCAGCGGTAACGCTTGAAGATGAGTTCCTAGAAACGCCACAAACTCTACT
CTCGCAGCTACTGAACTCGGAGCTGCTGCGTGTAGACTCCGAGTCGCATG
TGTTCCAGGCGGCGCTTCGTTGGATTAAGCACGACGTGACGCAGCGCCGC
TGCTACGTCTTCGATGTCCTGTCCCACGTGCGCATGGCGCTTGTTCCGGT
AAATGTGATCGACAAGGCTCTGAAGGACGACTGTCGCGACATGTCCGTGA
AGATAGCCCTGCGCTCATTTGCCGGGACATTGCGTCCAAGCGCGGACATT
GGTGCGCTGCGGTATGTCCGCGTCAGCTGGCCAGAAGACATATATATCAT
GGGGATCTCATCGGGATACGCGCGACTGACTCGGCGACTGCATCTTCGAG
AACGGGCAATCGATTATTTCGGCGGGAGTGACGAACGGCCTATGGAGTGG
GACGCATCCTGCAAG
UFO01459.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9426-RA | 3184 | CG9426-RA | 428..1560 | 5..1112 | 4985 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13219037..13219496 | 464..5 | 2285 | 99.8 | Minus |
| 2L | 23513712 | 2L | 13218148..13218521 | 1021..656 | 1460 | 97.1 | Minus |
| 2L | 23513712 | 2L | 13218783..13218979 | 658..462 | 985 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:56:56 has no hits.
UFO01459.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:22 Download gff for
UFO01459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-RA | 421..1563 | 1..1115 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:42 Download gff for
UFO01459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-RA | 431..1573 | 1..1115 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:21 Download gff for
UFO01459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-RA | 421..1563 | 1..1115 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:21 Download gff for
UFO01459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13218037..13218520 | 657..1115 | 93 | <- | Minus |
| 2L | 13218785..13218976 | 465..656 | 100 | <- | Minus |
| 2L | 13219037..13219497 | 1..464 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:22 Download gff for
UFO01459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13218037..13218520 | 657..1115 | 93 | <- | Minus |
| arm_2L | 13218785..13218976 | 465..656 | 100 | <- | Minus |
| arm_2L | 13219037..13219497 | 1..464 | 99 | | Minus |
