UFO01460.5prime Sequence
1071 bp (840 high quality bases) assembled on 2008-09-15
> UFO01460.5prime
CAGTCGACATGTCGAATTCCGTGAATATATCAGTGGAAACGACTTGCGAG
AACCAGATACGTGAGATTGGCTACGATGGCACCGAATTGTATCAGCCGCC
GCCGACTTTGTCGGAAAGTCTGGCGAAATGTGCGGCGCGCATAGACTTTA
GCAAAACGTCGCTGGACGACCTCAAGAAGGAGGAGAAGTCGGCGGCAGCG
GCCGCCGACGAGGACAAAGACGCCACTCAGTTCCAAGAGAGCCTGTGGCC
CTGGGATGCGGTGCGCAACAAGCTGAAGGATGCGCTCACTGAGATATGTG
TGCTGTCCGATGTGATTTCCATTGCCAAGGACAAGCGCTATCTAGTGCTC
GATCCACTGCTCGAGGAGGCTGACGACACCAAGCCCATTGTGCAGGTGTA
CAGTCGCAAGAAAGCCATCTCTCAGGCAGCCCAAGTGCTCCTAAGTGGCG
CTGAACGCCTGCGGAACGCGCACAGCGAGCAGCGCAATCGCAATGTCTCA
GATTTCCACATCGAACTACTGCGCCTGCGACAGAACTGGCGCCTGAAGAA
GGTGTCCAATGCGATTATCGGAGATCTCAGCTACCGCACCGCGGGCTCCA
AGTTTGGCATGAGCGGCACCTTCGAGGTGACCAAAGCTGAAGAGACCGGT
GATGAAGACACAGCCAGCTCATCCAACAGTAGCAGTAGCGTATCCGGCAA
CAATGGCATGCAACTTAAAGCCAGCTCCGCATTGCGTGTGATTGTTCCAG
CGGAACTGCAGGGTGTCGCCTATGTAAAGGTGATCACAAGAGTCAGAGAT
TGGACGTCAGTATTGTGGCCGACCATTACTGCAGTGGTGCGCAAGACTGA
TCGCAATGGCTTCGAGACATCGTATGCCGGACACATGAGACATCCTGGCT
CGACATCGCTCGTGCAATCATATATCGTGCTACCTCATCACACGCATACA
TGCTGTCGACTCTGTCCTCGCGGCAAACCACCCTCTCGAGCCTGCATAAC
AGTCGCAGCCATGAGTGAGATCACATCAATCCGGCTTCGAAACATGCACT
GAGTAGCAGCTAGCAACCTGG
UFO01460.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED17-RA | 2060 | CG7957-RA | 59..838 | 9..788 | 3660 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18189290..18189980 | 98..788 | 3215 | 97.7 | Plus |
| 3R | 32079331 | 3R | 18189130..18189219 | 9..98 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:24:51 has no hits.
UFO01460.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:44 Download gff for
UFO01460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 59..844 | 9..796 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:38 Download gff for
UFO01460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 66..851 | 9..796 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:59 Download gff for
UFO01460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 59..844 | 9..796 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:59 Download gff for
UFO01460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18189130..18189218 | 9..97 | 100 | -> | Plus |
| 3R | 18189290..18189986 | 98..796 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:44 Download gff for
UFO01460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14014852..14014940 | 9..97 | 100 | -> | Plus |
| arm_3R | 14015012..14015708 | 98..796 | 97 | == | Plus |
