UFO01463.5prime Sequence
1129 bp (1013 high quality bases) assembled on 2008-09-15
> UFO01463.5prime
CAGTCGACATGGAGCTCAAGTACTCCGTCCAATCGCTTTGTCTCACCTGC
CTTGTCCACCTGGAGCATGGTGCTGGACACGATCTCTTCGTGGTTCCAGA
TCTGTTCCAGAAGCTCAGGGCATGCACTTCGTTTGATGCGGATCAAAACG
ACGGTTTCCCGAGAAACCTGTGCACCCAATGTTTCACCAAGCTGAACGAC
CTGCATGACTTCCGCGAACTGTGCGCAGAATCCATTAAACGTCTAAAGGA
AATGGTGACCAGCCAGAGGAATATGCCCATGGGTGTATTCGAATCTATAG
CTGATGATTCTGAGGCACCTGAAAGGCCAGAGGAGCCGGCCAGTTTCGAT
CCGCTGCTGAATAACAAACTAGAGATGATTGACAACGAGGAGGATGTGTT
CAAGTTGCTGGAAAAAGTTGACAAGGAACTAGAGGAGCATTCAAGGGACC
AAAGCGAGGAGCACTTCTCCAGTGCAGAGCACAACGGACTGGAGGAGGAG
AAAAAGGAGTCGGAAGGGTTCAACAGCGACGATGAGCAGGCCATGGGGCA
GCGACGGATTGCGAACGACAAGCGTAAACTGTTTCGCCTTATGAGCTGTT
CCATCTGCCAGCAAAAGTTCAAAAAGCAATCAAAGTTCGAGGAGCACATG
AAGCACCACAATGACCTGTTGCCGTTTCAGTGTCAGGAGGAAAGCTGCCG
AAAGGGCTTCACCACAGCCGGTGCACTGCGTTTGCACGTGGACTATGCGC
ACTCCAAGAAGGAGGATACGGTTCCCTGCACCGTGGAGGGCTGTCAATTG
GTTTTTTCCCGTCTCCGGCTGCTGACCATTCACTTGAAAAAGGTTCACAA
CCAGGCGAGGGTTATTGCTCCGCGGGTGAACAGTCTTGCAAGGAATGCGC
GTGTGTTTCGTTGCCCGTGCTATGAGAAGCACATGTACACGCACACGGCG
AGAGCTTCCCTATCGTGTACATTTGCGCAAGGGCTTTACATCATAGTGCC
TAAAGAATCATCTTCTTCGCATGCTGCATCAGAACTAACGTGTGTCAGTA
CTGCGGATGGCAAGAACGCCGCAGATGGATTAGCCATCGGATCCACCCAC
GGAACGGTAGTGCCCAATCGGCAATTGCC
UFO01463.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7386-RA | 2247 | CG7386-RA | 70..1134 | 9..1057 | 4805 | 97.8 | Plus |
| CG10274-RB | 3034 | CG10274-RB | 453..535 | 345..427 | 220 | 84.3 | Plus |
| D19A-RA | 3233 | CG10269-RA | 282..353 | 140..211 | 210 | 86.1 | Plus |
| CG10274-RB | 3034 | CG10274-RB | 914..991 | 638..715 | 180 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6189814..6190878 | 9..1057 | 4400 | 97.3 | Plus |
| 3L | 28110227 | 3L | 6181295..6181377 | 427..345 | 220 | 84.3 | Minus |
| 3L | 28110227 | 3L | 6188771..6188842 | 211..140 | 210 | 86.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:57:15 has no hits.
UFO01463.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:53 Download gff for
UFO01463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-RA | 70..1149 | 9..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:59 Download gff for
UFO01463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-RA | 58..1137 | 9..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:42 Download gff for
UFO01463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-RA | 70..1149 | 9..1070 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:42 Download gff for
UFO01463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6189814..6190893 | 9..1070 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:53 Download gff for
UFO01463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6182914..6183993 | 9..1070 | 97 | | Plus |
