UFO01466.5prime Sequence
1147 bp (1037 high quality bases) assembled on 2008-09-15
> UFO01466.5prime
CAGTCGACATGACTGTCTGTGTGCTCTGCCTGGACAGTAGCAATGCTGGC
TACGGCCTACAATCCGAGGAAGGCGTCCGTCTGAACATTAGGGCGACCAT
CCACAAGCACTTCGCGTTCTCCGAGGTTCTTACGGCTGGCGGTGATGCTG
AGGTCTGTCGGGAGTGCTGGAACTGCGTTAGCAGCTTCGAGGAGTTTCAC
CAGCGCGTCTCCTGCCTGCACCGGCAGCGGAGCAGCGATTCCAAAAGCGA
ACCCATCGAATTTTGCGGTCAGACAGAGGAGGCCATCATTAATCCGCTAT
ATTCTGTGGAGTTGGACGCGTTGGCGGAGGCCTTTTTTGCGCCCAGTGAG
GTCAAGGTGGAGGTGAACGAACTAGAACCCCTGCCCAAGGTGGAACTCTT
GGAAGACCCAGTTAAAACGGAAATCAGAACAGCTCCGAAACGGTTGGGTG
TCCCAAACGAAGGCTCACCACACTCGAAGCGGCGCATTAAAAACGAGCTG
CCAGTGGATAGTGACTCGGATGCACCTCTGGCCGATTTTTTAAACTCGGA
TTCAAAGAGAAGTTCAGTTGGACCCGCAAAGAACAGCGAAGCGAACAAGG
GACGCCAGCTACGAAGGAGCGCAAGAAGAGGACGGCCACCCAAAGCTAAG
CCGGAATCGGCTCCTTCCCCAAAGAAGGAACTGGACTCCGAAGATGGCGA
AGAAAATGCCAGGGATAACAATGACATGGAGTTCGTGGCTCCCGAGGCTG
TCTTGGGCACTGACGACAGCTCCAGTTCCTCCAGTGAGAGCAGTGGAGAG
GATTCCGACCACAGCCTGCCGGACATAGAGCCTGAGGAACGTTACGCTGA
GATTCCCAAGCGGGTTGTGGTGAAACCTAAGAAGTACCGAAAAGGGAAAA
GCCACTGGTTCCACCCGTTCGTCTGAGTCGGGAGGAGATTGAACGGAGGA
GCTCAGCAGACGAGTACGATGAGATTATCCTGCAGTTCTTCAAAAGTTCC
GTGCTCCTGGTGCATCTGCTGGTGCAGAACTTTGCGGACTGCGACGCCAT
CACGCGTTTCCACAACATCGAATCTGCTACATCGAATGGCTGCGGGAAAA
GGTCCACTGGCCAAGCTTTGCGAAACACGTCTTGTTCAAGAATCGAA
UFO01466.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4707-RA | 2248 | CG4707-RA | 118..1232 | 4..1107 | 5180 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24605748..24606723 | 1088..124 | 4305 | 98.5 | Minus |
| 2R | 25286936 | 2R | 24606783..24606906 | 127..4 | 605 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:14:21 has no hits.
UFO01466.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:21 Download gff for
UFO01466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 113..1232 | 1..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:05 Download gff for
UFO01466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 108..1227 | 1..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:53 Download gff for
UFO01466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 113..1232 | 1..1107 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:53 Download gff for
UFO01466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24606785..24606905 | 1..125 | 96 | | Minus |
| 2R | 24605729..24606721 | 126..1107 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:21 Download gff for
UFO01466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20493252..20494244 | 126..1107 | 98 | <- | Minus |
| arm_2R | 20494308..20494428 | 1..125 | 96 | | Minus |
