UFO01470.5prime Sequence
1128 bp (1027 high quality bases) assembled on 2008-09-15
> UFO01470.5prime
CAGTCGACATGGCCCTTTACCGCTCTGATCCGTATTCCATAATGGACGAC
CAACTTTTTTCAAATATTTCAATATTCGATATGGATAATGATCTGTACGA
TATGGACAAACTCCTTTCGTCGTCCACCATTCAGAGTGATCTCGAGAAGA
TCGAGGACATGGAAAGTGTATTTCAAGACTATGACTTAGAGGAGGATATG
AAGCCAGAGATCCGCAACATCGACTGCATGTGGCCGGCGATGTCCAGCTG
TTTGACCAGCGGTAACGGTAATGGAATAGAGAGCGGAAACAGTGCAGCCT
CGTCGTACAGCGAAACCGGTGCCGTATCCCTGGCGATGGTTTCCGGCTCT
ACGAATCTCTACAGCGCGTATCAACGATCGCAGACGACAGATAACACCCA
GTCAAATCAACAGCATGTCGTCAACAGTGCCGAGAACATGCCGGTGATCA
TCAAGAAGGAGCTCGCAGATCTGGACTACACGGTCTGTCAGAAGCGCCTC
CGTTTGAGCGGCGGTGACAAGAAGTCACAGATCCAGGACGAGGTCCATTT
AATACCGCCCGGCGGAAGTTTGCTCCGCAAGCGGAACAACCAGGACATTA
TCCGCAAATCGGGCGAATTGAGCGGCAGCGATAGCATAAAATACCAGAGA
CCAGACACACCTCACAGTCTTACCGACGAGGTGGCCGCCTCAGAGTTTAG
ACATAACGTCGACTTGCGTGCCTGCGTGATGGGCAGCAATAATATCTCGC
TGACCGGCAATGATAGCGATGTCAACTACATTAAGCAAATCAGCAGGGAG
CTTCAGAATACCGGCAAGGATCCGTTGCCGGTGCGTTACATCCCGCCGAT
CAACGATGTCCTCGATGTGCTCAACCAGCATTCCAATTCGACGGTGGCCA
ACAGCAGTTGACCAACAGCACTGGACGAGCAACAACAGGCCATCGATATA
GCCACTGGACGCACACAGTGATTCTCCGCCGACGACCGGCTCTGATAGTG
ACTCCGATGACGTGACCCCTCACTTGACTGGCGCATCATCGCACTAGCAA
AGGCGGGCAGCATGCAGCATCCCATCAACACAACACGCACAACAAACAAC
ATGAAGATCACGCACGGCAGCTGCCATG
UFO01470.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dm-RA | 3484 | CG10798-RA | 632..1721 | 9..1085 | 5020 | 98.3 | Plus |
| dm-RB | 9166 | CG10798-RB | 628..1717 | 9..1085 | 5020 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3375006..3376014 | 9..1012 | 4795 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:04:04 has no hits.
UFO01470.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:00 Download gff for
UFO01470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dm-RB | 620..1705 | 1..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:51 Download gff for
UFO01470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dm-RA | 600..1685 | 1..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:23 Download gff for
UFO01470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dm-RB | 620..1705 | 1..1074 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:23 Download gff for
UFO01470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3374998..3376102 | 1..1090 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:00 Download gff for
UFO01470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3269031..3270135 | 1..1090 | 97 | <- | Plus |
