UFO01471.5prime Sequence
1115 bp (1012 high quality bases) assembled on 2008-09-15
> UFO01471.5prime
CAGTCGACATGTTCGAACTAGAGGATTATTCGAGCGGCATACATGAGGGA
TTCTTCAGCAAATATGCGGATGCGGCTGGACCCTCGCTAGACTTTTATGT
ATCCGACTCGATGCAGGAGATGCTGAACGTGGACATCCGCGCAGAGATCG
CCAATGTGGTGGGCAGTTCCAGCAGCGACTTGACCTCGTCCCTGGACCAA
ACACTGGAAGCTATATCCGCGATAAACAACAACCAGAGCAATGGAAACAG
CAGCCAGTCAGCTTCTTACAATGCGAATGCGAATTTTCTGACCAGCAGCG
GACTCCACGCCTCACCCACAGCGAAATGGATGGGCTCGTCGGCCAATTTT
TGGTCCAACAGCGATTACTATGCGGATCTGGGGGCATGTGTGAACCCCAT
TTCCGTAATGCCACTGATAAATTCGACTTCTGCAGGAATGTTCTCGCCAA
AAAAAAACAAGACAGCCTCAAGTACGCAGGGAAGATCGGGAGCGGTGCCC
TCGTCGCCCAGCGCCGAAAGGGATCAGCACAAATCGCACCTGACATTTTC
GCCGGCTCAGATGAAGGTCAGTGCAGGATCCATGCGGCGGGACCAGGTGA
TGGCACACATTCCCAAGCAAATATCCGTGGTCACGGGCACCGGAACCACA
GCGCCCGCCACAATGGCCACCAATTCGGTGCTTCAACGGCGTAATTCCTC
GGCCGTGGATGCTGTACGTAAGGATTTGGTCACAGAGCTGCGTAAAGCAC
AATCCAGTCCAGTGCCCAATTCCTTGGAGGAGCTGGGCAAGGGAAAAGGA
TCAACACTGCTAAATGCCAGTGTTGGGGCGACCAACACCATTAAACTGGC
GCCCGGTATCGGTGGGTTAACCTTTGCCAACAGTGCAGCCTACCAGAAGC
TGAGCAAACATCCTTGGTTAGTCACCAGGCGGTATTTCGCAGAGCAGATC
CATATGGGTCTCAGCGGGAGGACTCAAACAGCGAGACTGCAGGCAGCACC
ACGCCAAGAGCATGCTCGCGGCAACTCGCCGCATCATCAAATGCAACGCA
CTACGCTGGATCACTCATCACTGTCCTCTCATCTGCATCCTCTCCCCTAG
ATGTGAGCAACTGGT
UFO01471.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jumu-RA | 3860 | CG4029-RA | 345..1474 | 7..1111 | 5025 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10358098..10358972 | 68..940 | 4275 | 99.8 | Plus |
| 3R | 32079331 | 3R | 10350526..10350588 | 7..69 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:34:30 has no hits.
UFO01471.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:23 Download gff for
UFO01471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jumu-RA | 339..1479 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:54:53 Download gff for
UFO01471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jumu-RA | 337..1477 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:11 Download gff for
UFO01471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jumu-RA | 339..1479 | 1..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:11 Download gff for
UFO01471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10358099..10359171 | 69..1115 | 97 | | Plus |
| 3R | 10350520..10350587 | 1..68 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:23 Download gff for
UFO01471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6176242..6176309 | 1..68 | 95 | -> | Plus |
| arm_3R | 6183821..6184893 | 69..1115 | 97 | | Plus |
