UFO01474.5prime Sequence
1185 bp (1047 high quality bases) assembled on 2008-09-15
> UFO01474.5prime
CAGTCGACATGGAAACCGAGTCGATGGCTCCAAGCAGCAGTGCGGCGGCT
GCAGCCACCAAGCTCCTGGTGGAGATCACCACCGACGGAATACCCAAGCT
GCACTGCCCGGTGTGCAACAAGGCGCTGGTCTCCCTAGCCGGATATGTGA
AGCACGTAAAGAAGCACCAGCCGCCGGGCGGCTTCGAGTGCCGTCACTGC
GATGCTCGGTTTTGCCACGAGGAGGAGCTCACCCAGCATGCAAAGGATGA
GCACGGAGTCACTGGCGCGGTAGCTGGACAGGAGCGAAAGCCTTTCGTTT
GTGAAAAGTGCGGCGCGGAGTACAAGTACCAGGAGGCATACCGTCGCCAC
TGCAGGACCAAGTGTGGCGAGGAAAAGCTACCCAGGGAGGAATCCCGACC
AATGGAGTGCAAGTGCTGCTACACCCGCTTCTCTAGCGCCTCTAACCTAT
CCAAGCATCGACGCAGTCGTCCCGACACCTGTGGACAGCCGGAATACGAT
TCGCCCGGTTCATCCGATGGGATGAAGAAACATAAGGCCTTCCGCAAGAA
GGACAGAAACAGGGACTCTGATGATGAAGATACCACCAGCGAAGAATCGG
AAGATAGCGATGATGACATTCCTCTGGCCAGTCGTCTGAAGACGAAGCTC
AAGCAGGAGAGCCAGAACTCGGACTCGGGCGACGAGTGTCCCGACTTCGA
ACCCAACAACAGTGAGGACGATGCGGATGCATCCGGATTCCAGCTTCCTC
CGCCGGCTATGGTCAAGGTGGAGGCCTTCGACGAAGAAGATTTCGAGTAC
CAGGACGCCAGCATGTATGTGAAGACCGAAAGCACCGATATCTTTAGCAA
CGAAAAGGATAAGCTGCTGGATGTGCTGCTCAATGAGGTGATGGCTTAAA
GCCCTTTGAGAGCCTAAAGGTGGAACAGGGCGCTGGTATACTAGACGAAA
TCGCGGCCGTGCCGCTAGGGAGGTTGCGGAGAGATGTCTTAAACTGAGGG
GTCATCAAATGGAAAACCTCCCGGGACCAGAAAGCGGGCAGACCGCAAGG
AAAGATACCTGTGGTCAAGAGAAGTATCGCAACGAACGCACCTAGATCGC
CCTTCCCCTGACAATCATCGGTACACAACGCGTAGCTAGAATCGCAGACT
AAGGAGGCCTAAGTGTACACGAAGTGAAATTCTGG
UFO01474.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zf30C-RA | 2976 | CG3998-RA | 405..1555 | 5..1138 | 5225 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9760120..9760850 | 386..1103 | 3025 | 97.1 | Plus |
| 2L | 23513712 | 2L | 9759679..9760054 | 12..387 | 1880 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:56:42 has no hits.
UFO01474.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:13 Download gff for
UFO01474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 400..1564 | 1..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:13 Download gff for
UFO01474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 404..1568 | 1..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:16 Download gff for
UFO01474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 400..1564 | 1..1146 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:16 Download gff for
UFO01474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9759671..9760053 | 1..386 | 98 | -> | Plus |
| 2L | 9760121..9760850 | 387..1103 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:13 Download gff for
UFO01474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9759671..9760053 | 1..386 | 98 | -> | Plus |
| arm_2L | 9760121..9760850 | 387..1103 | 97 | == | Plus |
