UFO01475.5prime Sequence
1153 bp (1044 high quality bases) assembled on 2008-09-15
> UFO01475.5prime
CAGTCGACATGCCAAACATGTCCAGCATCAAAGCGGAGCAGCAAAGCGGT
CCTCTTGGAGGAAGTAGCGGCTATCAAGTACCGGTCAACATGTGCACCAC
CACAGTCGCGAATACGACGACCACTTTGGGAAGCTCCGCCGGGGGAGCCA
CTGGCTCCCGGCACAACGTCTCCGTGACAAACATCAAGTGCGAACTAGAC
GAACTACCGTCACCGAACGGCAACATGGTGCCGGTTATCGCAAACTACGT
TCACGGTAGCTTGCGCATTCCACTCAGTGGACATTCAAATCATAGGGAGT
CCGATTCGGAGGAGGAGCTGGCAAGTATTGAGAACTTGAAGGTTCGGCGA
AGGACGGCGGCGGACAAAAATGGTCCTCGTCCAATGTCCTGGGAGGGCGA
GCTGAGCGATACTGAGGTCAACGGGGGCGAAGAGCTGATGGAAATGGAGC
CAACAATTAAGAGTGAGGTGGTCCCTGCTGTTGCACCCCCACAACCCGTC
TGCGCACTACAACCGATAAAAACAGAGCTAGAGAACATTGCAGGCGAGAT
GCAGATTCAAGAGAAGTGTTACCCCCAGTCCAACACACAACATCACGCTG
CCACAAAATTAAAAGTGGCCCCGACGCAAAGTGATCCGATCAATCTCAAG
TTCGAACCGCCTCTGGGAGACAATTCTCCGCTACTGGCTGCACGTAGCAA
GTCCAGCAGTGGAGGCCACCTACCACTGCCAACGAATCCCAGTCCCGACT
CCGCCATACATTCCGTCTACACGCACAGCTCCCCCTCGCAGTCGCCTCTG
ACGTCGCGCCACGCCCCCTACACTCCGTCTCTGAGCCGCAACAACAGCGA
CGCCTCGCACAGTAGCTGCTACAGCTATAGCTCCGATTCAGTCCCACACA
CTCGCCCATTCAAGCGCGTCATGCCCCACCCGCCGGCACGCTCTATGGCA
ACCACCATGGTATTTACCGCAGATGAAGTGGAAGCCTCATCCACTGGTGC
CGTCAGTGGGCAGGAGGCGCAAACCTGAGTATGGACTCTTGCCTCTTAGC
ATTCTGGATACGGTGGGCTTAAGAATCTTTCGCACCCGCAATCTCCGGCG
GGCATATCACAGTCAGCAGTTGATTAACTCGCTGCAATCTGCGGGACCAA
AAA
UFO01475.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr39-RD | 4828 | CG8676-RD | 556..1678 | 9..1132 | 5265 | 98.5 | Plus |
| Hr39-RA | 3291 | CG8676-RA | 498..1620 | 9..1132 | 5265 | 98.5 | Plus |
| Hr39-RB | 4844 | CG8676-RB | 572..1694 | 9..1132 | 5265 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21253670..21254792 | 9..1132 | 5000 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:09:53 has no hits.
UFO01475.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:39 Download gff for
UFO01475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr39-RB | 572..1694 | 9..1132 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:16 Download gff for
UFO01475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr39-RA | 511..1633 | 9..1132 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:42 Download gff for
UFO01475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr39-RB | 572..1694 | 9..1132 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:42 Download gff for
UFO01475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21253670..21254792 | 9..1132 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:39 Download gff for
UFO01475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21253670..21254792 | 9..1132 | 98 | | Plus |
