UFO01476.5prime Sequence
942 bp (911 high quality bases) assembled on 2008-09-15
> UFO01476.5prime
CAGTCGACATGGCGGCTACACCACCAATGCCGCCCGGATCAAACACCCAT
CAATTGAATGGCAAAACAGTCGGCAAGGGGAACCCCCTAGCTGAGGCGAT
CAATCAGCACTTTCAGCGGAAGAAACAGAATCAGCACCAGAGTCCCAACC
CCAGTCCAAACCCGAATCCCAACAGTCCCGCCAGCCGCAGCGGGAGCTAT
GAGCAGCTGGAGCTGCTGGATCACGCAACGCATCCACAGCAACAACAGGA
AGCCAGCAGTGGCAAGGCCAAGCCGAGCTGCCATTGCACCAACATTAGTA
TTATGCACCTGTTTCATGAGATGAAGCAGGAGTTCCCCACGATACCCGAT
GCCATAGTGACGCAATGCGTCAATGAGAATTGCCATCAGCGCGAAAACTG
TATCCAGATGTTGAGGAAGGAGCTCGCGCTTCATCCTATCCCAGTGCAGA
GCTATCCGGCAAAGGTGCTGCAGCAACAGCAGCAGCAACACCACCAGAAT
AGGCAGGCCAAGCCTCCCACGCCGCTCAAGCCGTCACGGATAGCACCACC
GCAGCCGGAAGCTGTGCTGAGCAATGGAGTGGCTACGCCGCCAGGTGTTG
GTAGCCCACATCCTGATACGCAGCCCAGGCCGCGACCCACGACGCTCAAT
CTGCAACGTCAGTTTAGCACTCAGCTGCAGCAAAAGATTATGCAGCGCCA
GCAGCGACAGCAGAGGGATCACCAGCCAGCCCAGCTGACGCCCACTTCCT
TGAGCAAGCCGCTACGCCGGGCACCGCCACTTCCGCCGCCACCCAACCGA
AGCCCGGCAGCCTCTCCAACGTAGCTCGTGTCTCAACAGTCCCCATGAGC
TCCAGCGAATCGGGAGCTTCGCTCAACGGCGGTCCCCATTATCGTCACCA
CGTCGGCGGGGGGTATTGCTACTGCGGGGTCAGAGACATTCG
UFO01476.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tab2-RB | 3305 | CG7417-RB | 419..1343 | 9..933 | 4310 | 98.2 | Plus |
| Tab2-RC | 3081 | CG7417-RC | 363..1287 | 9..933 | 4310 | 98.2 | Plus |
| Tab2-RA | 3249 | CG7417-RA | 363..1287 | 9..933 | 4310 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19299200..19300124 | 9..933 | 4145 | 98 | Plus |
Blast to na_te.dros performed 2014-11-28 19:42:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2458 | 146..300 | 172 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6892 | 467..560 | 136 | 63.2 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 938..1073 | 427..562 | 132 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6701..6784 | 420..506 | 130 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6829..6867 | 461..499 | 123 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6816 | 467..559 | 122 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2464 | 457..559 | 120 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6825 | 468..505 | 118 | 78.9 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7958..7993 | 471..506 | 117 | 80.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9402..9437 | 471..506 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2844 | 457..513 | 116 | 69 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1146 | 468..499 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2363 | 468..506 | 114 | 76.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6805 | 468..506 | 114 | 76.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1127..1171 | 468..511 | 114 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2441 | 468..506 | 113 | 78.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1096..1132 | 470..506 | 113 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2380 | 471..505 | 112 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2440..2483 | 463..506 | 112 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6821..6916 | 468..560 | 112 | 60.4 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3259..3310 | 440..493 | 111 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2351 | 467..506 | 110 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1105..1144 | 467..506 | 110 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2374 | 468..496 | 109 | 86.2 | Plus |
UFO01476.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:25 Download gff for
UFO01476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tab2-RA | 363..1287 | 9..933 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:17 Download gff for
UFO01476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tab2-RA | 324..1248 | 9..933 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:01 Download gff for
UFO01476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tab2-RA | 363..1287 | 9..933 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:01 Download gff for
UFO01476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19299200..19300124 | 9..933 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:25 Download gff for
UFO01476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15186705..15187629 | 9..933 | 98 | | Plus |
