UFO01478.5prime Sequence
1086 bp (1003 high quality bases) assembled on 2008-09-15
> UFO01478.5prime
CAGTCGACATGCGGAACAACTTTGCGTTCTACAGCGTCTACACCGGAGGC
GGTGGCGGAGTGGGCGTGGGCATGACTAGCCACGAGCATTTGGCAGCGGC
GGCGGCAGCGGCAGCAGCAGTGGCCCAGGGCACCACACCCAACATAGACG
AGGTCATCCAGGACACGCTGAAGGACGAGTGCTTCGAGGATGGCCACAGC
ACCGATTACCATGTGCTGACCTCCGTGTCCGATATGCATACGCTAAAGGA
CTCCAGTCCCTATGCCCTCACCCACGAGCAACTCCACCAGCAGCAGCACC
ATCACCAGCAGCAACTGCATCACCATCAGCAGCAGCAGCAACAACTTTAC
CACCAGCAACAGCAGCAGCAGCAGCAGCAACAACATCATCACCACCACAA
CAACTCCACCAGTTCGGCGGGCGGGGACTCCCCGTCGTCCTCGCACGCAC
TGTCCACCCTGCAGAGCTTCACCCAGCTGACCAGCGCCACCCAGCGTGAT
AGCCTCTCGCCGGAGAATGACGCCTACTTTGCGGCCGCCCAGCTCGGCAG
CAGCTTGCAGAACAGCTCTGTTTATGCTGGCTCGTTGCTTACTCAGACTG
CCAATGGCATTCAGTACGGCATGCAGTCCCCCAACCAAACACAAGCCCAT
CTCCAGCAGCAGCACCATCAGCAGCAGCAGCAACAACATCAGCAACACCA
GCAGCAGCAACTGCAGCAGCAGCAGCAGCAACATCACCACAATCAACACC
AGCACCACAACTCCAGCAGCAGCAGTCCGGGGCCAGCGGGTCTGCACCAC
TCGAGCTCCTCGGCGGCCACGGCGGCAGCGGTGGCTGCGGCAACGGCGGC
GGTCAATGGACACAACAGCTCCTTGGAGGACGGCTACGGATCGCCAAGGA
GCAGCACAGTGCGGCGGGGGCGGTGGTACTCTGCCAGCCTTCAGCGATCG
CATACCCACAGTGGCTCGTGACGTTACGCTCGATACATTATCGCGGTCAG
ACGATACTGATCGATCGTAGCTACGCCACCTCCTCTCGGCAGGCCAGTGG
CGTCGGGTGGACGGATGATCTCGATGGGATCGAATG
UFO01478.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-RA | 4459 | CG3992-RA | 1029..2075 | 9..1036 | 4785 | 98.1 | Plus |
| srp-RB | 4414 | CG3992-RB | 1029..2075 | 9..1036 | 4785 | 98.1 | Plus |
| srp-RG | 3377 | CG3992-RG | 968..1457 | 566..1036 | 2000 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15995168..15995724 | 9..565 | 2785 | 100 | Plus |
| 3R | 32079331 | 3R | 15999322..15999704 | 562..942 | 1815 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:48:00 has no hits.
UFO01478.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:17 Download gff for
UFO01478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RB | 1025..2091 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:19 Download gff for
UFO01478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RA | 1023..2089 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:33 Download gff for
UFO01478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RB | 1025..2091 | 1..1048 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:33 Download gff for
UFO01478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15995164..15995724 | 1..565 | 99 | -> | Plus |
| 3R | 15999326..15999773 | 566..1000 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:17 Download gff for
UFO01478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11820886..11821446 | 1..565 | 99 | -> | Plus |
| arm_3R | 11825048..11825495 | 566..1000 | 97 | -> | Plus |
