UFO01479.5prime Sequence
1132 bp (1021 high quality bases) assembled on 2008-09-15
> UFO01479.5prime
CAGTCGACATGAACATGAATCAGTACTACGACCTGGACAATGGGAAAAAT
GTGATGTTTATGAACGATGCATCCAGCACCAGTGGCTATAGCAGCAGTAC
ATCACCCAACTCCACCAACCGATCCTTTTCACCAGCCCACTCCCCGAAAA
CCATGGAACTGCAAACGGACTTCGCCAATCTTAATTTGCCCGGCGGCAAT
TCACCACACCAGCCGCCAATGGCAAACTCACCATACCAGAATCAGCTGTT
GAACAACGGCGGAATTTGCCAATTGGGTGCTACCAATTTAATAAACTCCA
CTGGCGTTAGTTTCGGCGTTGCTAATGTCACCAGTTTTGGCAACATGTAC
ATGGATCACCAGTACTTTGTGCCCGCTCCGGCCACTGTGCCACCGTCCCA
AAACTTTGGATACCATCAAAATGGCCTGGCATCTGACGGCGATATCAAAC
ACGTGCCGCAGCTGCGGATCGTTGAGCAACCGGTGGAGAAGTTCCGCTTT
CGGTACAAGAGCGAGATGCATGGAACACATGGATCGCTAAATGGCGCCAA
TTCGAAGCGGACGCCCAAAACCTTCCCGGAGGTTACACTGTGCAACTACG
ATGGACCCGCCGTCATCCGGTGCAGTTTGTTCCAAACTAACTTGGACAGC
CCACATTCCCATCAGCTGGTCGTGCGCAAGGACGATCGGGATGTGTGCGA
TCCGCATGATTTGCACGTGTCCAAGGAGCGCGGCTATGTGGCGCAATTTA
TCAACATGGGCATCATACACACCGCCAAGAAGTACATATTCGAGGAACTG
TGCAAGAAGAAGCAGGATCGCCTGGTCTTTCAGATGAACCGCCGCGAGTT
GTCCCACAAACAGCTACAGGAACTGCATCAGGAGACAGAGCGTGAGGTGA
GGACATGAACTTGACCAGGTGCGGCTCTGCTTTGAGCCTTTAAATTGAGA
CACGGCGCATGGGTTCCACTTGCACCGCCTGTATAAGCAAGCAATCAATA
ACCGCAGTCGGCACAAACTGGAAGGCTTCCCATCGTCCGCCTGAACAACC
CACTGGGCGGGGTGGAGGGCAACGGATGACTATTCTTACGGGGGAAAGGT
CAGCAGAAAAACATACGTGAGGTCTTCAGAGA
UFO01479.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rel-RA | 3499 | CG11992-RA | 543..1660 | 9..1114 | 5005 | 97.5 | Plus |
| Rel-RB | 3351 | CG11992-RB | 395..1512 | 9..1114 | 5005 | 97.5 | Plus |
| Rel-RC | 3042 | CG11992-RC | 86..1203 | 9..1114 | 5005 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9046529..9047435 | 914..9 | 4455 | 99.7 | Minus |
| 3R | 32079331 | 3R | 9046065..9046229 | 1074..917 | 320 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:00:11 has no hits.
UFO01479.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:37 Download gff for
UFO01479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RC | 80..1173 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:21 Download gff for
UFO01479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RA | 537..1630 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:03 Download gff for
UFO01479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RC | 80..1173 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:03 Download gff for
UFO01479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9046524..9047441 | 1..918 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:37 Download gff for
UFO01479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4872246..4873163 | 1..918 | 99 | | Minus |
