UFO01480.5prime Sequence
1113 bp (988 high quality bases) assembled on 2008-09-15
> UFO01480.5prime
CAGTCGACATGATGAACAACCATTTTCACTTGCAACACGATCATCCACCG
CAGAACGTGGCACATCCGTTCATGCAACAGCCGAGTACCGCTGTCCCATC
AGCTCCTCCGGCCACCTACGGCTACTTAGCACAGCCAGCTGGCCAGCAGC
CGCAGTGGATGACCACCACCTACCAGATCCTGCCGCCCAGCGTAGGACCT
GCCACGGTGGCCAAGCGATACTATGCCACCACTGGGCCGCAGACCACGCA
TCCCACACATCCCAGCACCATCCAGATCACGAACAGTTTCGCTCAGCAAT
CAACGCCACCGAAGCAACAGGCGGCAACAAGCTGCAGCCCATTCAAGGCC
AACAACATCCGAATCATCTCGACGGCGCCAAGTGTATACAGTCTGAATAA
GCCGCCACAGGAAGCGCACTCCACATATGCTCCCGTTCAGTCGTACTACT
TGCCCAGTGGCGGTGGCCAAACTGCGGGACAAATCAATCTACTGGCGGCC
AGCGGAACTGGCAAGCAACTGCAGCCGCCGCCGCTGGTGCCTGTGACCAA
TTCCACCTCACCGCCCTCCACCGTCGTGTTAGACCGCATAAACATTTGCA
TCAATAACCACTATACGGAGACGCCCACTTCGCTAAGTTCATCGCTTACC
ACGGCCCAACAACCTTCGCCCATCATACCGGCCATCCAGCACAAGGCCAT
CCTGCCCCTCATCGACAGCAGCACGGCGGATAGCAGCAGCTGCAGCAGCA
GTTCTGTATCGAGCAGCAGTTATAGTGGTACCGCGACCACCTCAGCAGCA
GTTGTGATTGTGGATGAGCCGGATTCAACGACCACAACGCCACAGACACC
GCCAACTACGCCGGAGGCCATGAGTTCACCCGGTAAAAGTTCGCCCTCGC
CTCCGCTACTAGCCACGCAATCGCTGCTCAGTCACCATGACAGTCAACGC
ACAACGCAGCGCACTCTCCCCACGCCGCCCATGCGTCTCAGCGTGCTAGG
AGTTCATGATGGATCTGCTTGCAAGAATTACTGACTGATGGACGATGATG
GACTACTGAGGCCCGACATCGACTGGCCAGAACGATACGAGTCTGCATCG
GATGACCAAGCTC
UFO01480.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pcl-RB | 4384 | CG5109-RB | 499..1420 | 9..930 | 4550 | 99.6 | Plus |
Pcl-RA | 3836 | CG5109-RA | 499..1420 | 9..930 | 4550 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18135924..18136845 | 9..930 | 4550 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:57:07 has no hits.
UFO01480.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:20:08 Download gff for
UFO01480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcl-RA | 491..1420 | 1..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:23 Download gff for
UFO01480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcl-RA | 488..1417 | 1..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:05 Download gff for
UFO01480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcl-RA | 491..1420 | 1..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:05 Download gff for
UFO01480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18135916..18136845 | 1..930 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:20:08 Download gff for
UFO01480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14023421..14024350 | 1..930 | 99 | | Plus |