UFO01481.5prime Sequence
1146 bp (1000 high quality bases) assembled on 2008-09-15
> UFO01481.5prime
CAGTCGACATGGCAGCGGTTCGAGGACATCAGTATTTCAGTCTGCGCTGG
AATAACTACCAGAACACGATGACGTCCGTGTTTCAGCAGCTGCGCGAGGA
TCTCTCCTTTGTGGACGTCACTCTGTCCTGCGAGCATGGATCCCTCAAGG
CGCACAAGGTCGTCCTGTCCGCCTGTTCGACGTATTTCCAAAAACTACTG
CTCGAGAATCCGTGCAAACATCCCACAATTATCCTTCCCGCCGACATTAT
CTTCACCGACCTGAAAACGATCATCGATTTTGTTTATCGTGGTGAAATCG
ACGTCACCGAATCGGAATTACAGGGCCTCTTGCGCACCGCCGAGCAGCTA
AAGATCAAGGGACTCTGCGAAACCGCCGAGAACGCGGATGACCTGAACGA
CGCGGCCACTGCAACGATCACAGTTTCAGAGAACATACAGCAGGCGGTCG
TTGGCAATATAGTGAACGCCGCCATAGTTCCCGGAGCTCCGTCGCCCTCC
TTGGAACAGCAGCAGCAACACCACCAACAGCAGCAACAGCAGCAGGCGCA
GGAGCAGCACCAGCAACAGCAGGTGCATGCCCAGCAGCAACAGCAGCAGC
AGCAGCAAATAAACGCTGCCCTGCTTACGCAACACGGAGTGTCCAGCGGA
AGTGTATCTCTTTCCGGGCAATTGCTGAGCTCCTCGGCTAGCGGCAGCAG
CGGAAGTTTAGCCGGCGGACAGCAGGCATCACAGACGCCATCCGGTTTGC
AGCCGACGCCGCGCAAGTCTCGACTAAAGCGCTCCAAATCGCCAGATTTG
TCATCGGGCGGAGGAGCAGGAAGCTCTGGAGGCTCAAGTAGCGGCTCAAC
GCAGCAGCAACCGCAGCCGGCGCTGCACCACCTGCCGCAGACCATTCTCA
TCCAGGGCCAAAATCCGAATTCCATTGTGAGCCTTCAGCAGACGGCCGAC
GGCAATTACATACCAGTTTCGGGTTCTGGCGACGATTCAGACGCCGAGGA
CCACGAGCACGAACACACCACGGACCCGGGTACGGGCACGGAAGAACATA
CCGCCAGGACACGGTCCATAGCCACGAGCACAGTTCAGATTCCGGAGCAC
GGACTATAGGCCGAACAAAGATCTCGCAAAAACCGAGAGACCTCTC
UFO01481.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| psq-RN | 6336 | CG2368-RN | 762..1876 | 5..1124 | 5175 | 98 | Plus |
| psq-RM | 6336 | CG2368-RM | 762..1876 | 5..1124 | 5175 | 98 | Plus |
| psq-RB | 5367 | CG2368-RB | 762..1876 | 5..1124 | 5175 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10610544..10611308 | 318..1084 | 3505 | 98.3 | Plus |
| 2R | 25286936 | 2R | 10562024..10562191 | 157..324 | 840 | 100 | Plus |
| 2R | 25286936 | 2R | 10561801..10561956 | 5..160 | 765 | 99.4 | Plus |
Blast to na_te.dros performed 2014-11-28 21:04:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6880 | 840..920 | 120 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6906 | 802..960 | 117 | 58.6 | Plus |
UFO01481.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:19 Download gff for
UFO01481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| psq-RC | 474..1571 | 1..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:26 Download gff for
UFO01481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| psq-RI | 742..1839 | 1..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:38 Download gff for
UFO01481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| psq-RB | 758..1855 | 1..1101 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:38 Download gff for
UFO01481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10562026..10562190 | 159..323 | 100 | -> | Plus |
| 2R | 10561797..10561954 | 1..158 | 98 | -> | Plus |
| 2R | 10610550..10611324 | 324..1101 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:19 Download gff for
UFO01481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6449531..6449695 | 159..323 | 100 | -> | Plus |
| arm_2R | 6449302..6449459 | 1..158 | 98 | -> | Plus |
| arm_2R | 6498055..6498829 | 324..1101 | 97 | | Plus |
