UFO01482.5prime Sequence
790 bp (677 high quality bases) assembled on 2008-09-15
> UFO01482.5prime
CAGTCGACATGGCTGAGTACTGGCAGCAGTTGACCAACGGCGCCGGAGAA
GCGGGACCCGGCAATGAGTCATCCGCCATGGCAGACTGCAACGGAGGTCA
CGAATCGGCGGCAGTGGGTGGTTCCTGCAACAGGCACAGCAACAACAATT
ACGTGAACTTCAATCAGTTCATTATGCAGCACAATCTGGGTGGAGGAGCG
CCCTCGAATGCCACCAGCACTATGCAACATCCGGTGGGCAGCAGCTACAC
TAACTTCTCCCTGGGCGGCGGTGGAGGAGCCTTTGGACTGAACCCACCAG
TGGCATCCGCGAGTACCAGCCACTTTGCAAATGTGAGTCATCAATCTCCG
AATTTTTACTCGCAGGCCATGATCCCAACCTATCAAAATGGCGATGGCAT
CGCTAGAGTCACCGTCACCAGCAGCTATGGGTCGGTCAATCCGAGCAACA
GCAATTTTTCGAGTTTTTACACACCTTTTGGCAATAATCCGTTTGACTTC
AGCGCTTCCAAGCTGCACGCCTCGGCTCCGGAATTCGTGCCCAATTTCGC
CAAGCTGAGTCTAGAAGAGACACCGGCAGCCGCCACTACGAACGGAAACA
GCACTGCCAGCCTAGAGACTGCCATAAATGAGACGAGACCTAGGACTCTG
CAGCCCAGAACCAGCTGAACGAGGAGCTAACACCATGCTCGAACCATATT
ACGAACGGGAGCGTGAGCGGGAACGTGACCGGACCGGACAGGAAAGAGAC
CGGGACAGAAACTGGACAAACCGGGACAGAACCGGGACAG
UFO01482.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stc-RB | 4145 | CG3647-RB | 411..1204 | 9..790 | 3625 | 98.1 | Plus |
| stc-RD | 4133 | CG3647-RD | 411..1192 | 9..790 | 3435 | 96.6 | Plus |
| stc-RA | 4124 | CG3647-RA | 411..1183 | 9..790 | 3300 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15113890..15114234 | 9..353 | 1725 | 100 | Plus |
| 2L | 23513712 | 2L | 15114300..15114713 | 354..759 | 1680 | 97.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:34:42 has no hits.
UFO01482.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:28 Download gff for
UFO01482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stc-RB | 405..1193 | 1..780 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:08 Download gff for
UFO01482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stc-RB | 403..1191 | 1..780 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:17 Download gff for
UFO01482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stc-RB | 405..1193 | 1..780 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:17 Download gff for
UFO01482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15113884..15114234 | 1..353 | 98 | -> | Plus |
| 2L | 15114300..15114737 | 354..780 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:28 Download gff for
UFO01482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15113884..15114234 | 1..353 | 98 | -> | Plus |
| arm_2L | 15114300..15114737 | 354..780 | 96 | | Plus |
