UFO01483.5prime Sequence
1054 bp (947 high quality bases) assembled on 2008-09-15
> UFO01483.5prime
CAGTCGACATGGACACGACACTGATGAACTTAATAGACGCTCCGCTGGAC
GAGTCCATGGATTTGTTCAAAGCGGAGGATGTCTTCGAACCGTTCGACGC
CGACCTGCACTCGGACATGCTGGACATCATCCTCAACGACATGGACCTGG
CGCCGACGCAGATGTACAACATGCTGCTGGACGAGCCTCGAACGCATACC
CAGCAGACGCAGTCCGTGGATCAGCAGCCGCAATCCGTCGAGCAACAGCC
GCACGTGAAAAGCGAGCACTCTTCGCCAGTGCACATCAAGGAGGAACTGC
ATCAGCAGCAACAACAGTCGCCGCTTCTCGTCTACAAACCAGATCCCCTC
ATAGCCACAAGCTACAATTGTCCCCAGCAACAGCCGACGGGCCTTTTGAA
GGCCGCCCAACCAACAGCCACCATACATCACATGGACGCCCAGCGGATGC
CGCCGAACACGGCGGTGTATCCCCCATCTCTGGGCAGTAGCTTTGTCTAC
CAGTCCATGTCCCCGCCCACGTCGCCGGTGGAGTCTGCGAACCAGAATGT
CAATGTCATGCAGCCCGTTGCTGCAACTCCTGCTCCCGCTTCTGCTCCTT
TGCCCCAGCAGTCGTATCCGCAACCCTTCATTACGTACAACTCTAAGGCC
GGAATGACTTCCGATGAAGCCATGTACTTCCTCTTGCAGCCCACGGTAGC
CAGTCCAACCCCATCTCCACCTGTGGCTCCACCACCGACAAGCACAGGTA
GTCGGGCCAGCAAGGTGCGAGTGGCACCACTGGCTCTGTCACCTGCCGCT
ATGGAAGTCCAGGGCAAGGTACCTATCAACCGGGTTCAACCCAAGTGAAG
GAGTAAAGCGCTCGGCCCACAACGCCATCGAGCGCGTTCGACTCATCACG
CAGATACGAGTGAGACTGTATGGAAGAGCAGTGACATCGATGTCGATCTA
AATCGACGACCATCATAGATGGCGAGCAGCCAGCAGAGTTCTGCGTGACA
GGACATCAGCAGCAGAATTCTCATCCTGCTAGCACGCTGCCATCGTCGTG
CAGT
UFO01483.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HLH106-RD | 3920 | CG8522-RD | 339..1216 | 9..884 | 4325 | 99.7 | Plus |
| HLH106-RC | 3818 | CG8522-RC | 237..1114 | 9..884 | 4325 | 99.7 | Plus |
| HLH106-RB | 3951 | CG8522-RB | 370..1247 | 9..884 | 4325 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19794910..19795787 | 9..884 | 4275 | 99.7 | Plus |
Blast to na_te.dros performed 2014-11-28 22:00:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6866 | 159..318 | 127 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6854 | 201..324 | 126 | 59.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1152 | 220..316 | 116 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2723..2833 | 219..328 | 110 | 61.4 | Plus |
UFO01483.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:32 Download gff for
UFO01483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH106-RB | 362..1252 | 1..893 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:10 Download gff for
UFO01483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH106-RC | 217..1107 | 1..893 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:59 Download gff for
UFO01483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH106-RB | 362..1252 | 1..893 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:59 Download gff for
UFO01483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19794902..19795787 | 1..884 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:32 Download gff for
UFO01483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19788002..19788887 | 1..884 | 99 | == | Plus |
