Clone UFO01485 Report

Search the DGRC for UFO01485

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:14
Well:85
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptsim-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01485.5prime Sequence

1109 bp (1008 high quality bases) assembled on 2008-09-15

> UFO01485.5prime
CAGTCGACATGACTAACCATCGGCGAGTGCGCAAGGATTGCTATGAGAGC
AGATTGCATGATATAGCCAAAACGTGTGCCATGAAGGAGAAAAGCAAAAA
TGCGGCACGCACGCGACGTGAAAAGGAAAACACGGAATTCTGTGAATTGG
CCAAATTACTGCCGCTGCCGGCGGCGATTACTTCGCAACTGGACAAGGCC
TCCGTCATCCGGCTGACCACGTCGTATTTGAAAATGCGCCAAGTCTTTCC
CGATGGTCTTGGCGAAGCCTGGGGCTCATCGCCTGCCATGCAACGCGGCG
CCACCATCAAGGAGCTGGGCTCCCATCTGCTGCAGACGCTGGACGGATTC
ATCTTCGTGGTGGCTCCGGATGGCAAAATCATGTACATCTCGGAAACGGC
CTCCGTGCATTTGGGCCTCAGTCAGGTTGAGCTGACGGGCAACTCGATAT
TCGAGTACATACACAACTACGATCAGGACGAGATGAATGCCATTTTGTCG
CTGCATCCGCACATCAACCAGCATCCACTCGCCCAGACGCACACGCCCAT
CGGCAGTCCCAATGGCGTCCAGCATCCATCCGCCTACGACCACGATCGCG
GATCGCACACCATCGAGATCGAGAAGACCTTCTTCCTGCGCATGAAGTGC
GTCCTGGCCAAAAGGAACGCGGGCCTCACCACCTCCGGATTTAAGGTGAT
ACACTGCTCCGGCTATCTGAAGGCTCGCATCTATCCCGATCGCGGGGATG
GACAGGGCAGCCTCATCCAGAATCTCGGCCTGGTGGCCGTCGGTCACTCG
CTGCCTTCATCCGCCATCACGGAAATCAAGCTGCACCAGAATATGTTCAT
GTTCCGGGCCAGCTGGACATGAAGCTCATCTTCTTCGATGCACGCGTATC
GCAGCTACAGATACGAGCCGCAGACCTCATCGAGAGACCCTGTATCAGTA
TATCCACGCCGCGGACATCATGGCCATGCGCTGCTCTCATCAAATCTGCT
GTACAAGGACAGTGACCACCAGTACTACGCTCCTCCCCAAGCGGGCGCTG
GTTGTGGGTGGCAGTCGTACGCGACCTGGTGCCAATCCCGGATCTCGCGG
AATGTTCAT

UFO01485.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
sim-RA 2825 CG7771-RA 101..1218 9..1109 5025 97.7 Plus
sim-RB 3162 CG7771-RB 489..1555 60..1109 4770 97.6 Plus
sim-RC 2882 CG7771-RC 210..1275 61..1109 4765 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13072661..13072858 60..257 990 100 Plus
3R 32079331 3R 13075069..13075276 688..894 975 99 Plus
3R 32079331 3R 13074079..13074251 255..427 865 100 Plus
3R 32079331 3R 13074837..13075006 528..697 850 100 Plus
3R 32079331 3R 13074568..13074672 423..527 525 100 Plus
3R 32079331 3R 13076216..13076304 910..996 345 97.8 Plus
3R 32079331 3R 13072499..13072550 9..60 260 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:25:02 has no hits.

UFO01485.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:50 Download gff for UFO01485.5prime
Subject Subject Range Query Range Percent Splice Strand
sim-RA 101..1200 9..1094 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:31 Download gff for UFO01485.5prime
Subject Subject Range Query Range Percent Splice Strand
sim-RA 98..1197 9..1094 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:03 Download gff for UFO01485.5prime
Subject Subject Range Query Range Percent Splice Strand
sim-RA 101..1200 9..1094 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:03 Download gff for UFO01485.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13072499..13072550 9..60 100 -> Plus
3R 13072662..13072856 61..255 100 -> Plus
3R 13074080..13074249 256..425 100 -> Plus
3R 13074571..13074672 426..527 100 -> Plus
3R 13074837..13075004 528..695 100 -> Plus
3R 13075077..13075276 696..894 99 -> Plus
3R 13076199..13076305 895..996 95 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:50 Download gff for UFO01485.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8898221..8898272 9..60 100 -> Plus
arm_3R 8898384..8898578 61..255 100 -> Plus
arm_3R 8899802..8899971 256..425 100 -> Plus
arm_3R 8900293..8900394 426..527 100 -> Plus
arm_3R 8900559..8900726 528..695 100 -> Plus
arm_3R 8900799..8900998 696..894 99 -> Plus
arm_3R 8901921..8902027 895..996 95 -> Plus