UFO01485.5prime Sequence
1109 bp (1008 high quality bases) assembled on 2008-09-15
> UFO01485.5prime
CAGTCGACATGACTAACCATCGGCGAGTGCGCAAGGATTGCTATGAGAGC
AGATTGCATGATATAGCCAAAACGTGTGCCATGAAGGAGAAAAGCAAAAA
TGCGGCACGCACGCGACGTGAAAAGGAAAACACGGAATTCTGTGAATTGG
CCAAATTACTGCCGCTGCCGGCGGCGATTACTTCGCAACTGGACAAGGCC
TCCGTCATCCGGCTGACCACGTCGTATTTGAAAATGCGCCAAGTCTTTCC
CGATGGTCTTGGCGAAGCCTGGGGCTCATCGCCTGCCATGCAACGCGGCG
CCACCATCAAGGAGCTGGGCTCCCATCTGCTGCAGACGCTGGACGGATTC
ATCTTCGTGGTGGCTCCGGATGGCAAAATCATGTACATCTCGGAAACGGC
CTCCGTGCATTTGGGCCTCAGTCAGGTTGAGCTGACGGGCAACTCGATAT
TCGAGTACATACACAACTACGATCAGGACGAGATGAATGCCATTTTGTCG
CTGCATCCGCACATCAACCAGCATCCACTCGCCCAGACGCACACGCCCAT
CGGCAGTCCCAATGGCGTCCAGCATCCATCCGCCTACGACCACGATCGCG
GATCGCACACCATCGAGATCGAGAAGACCTTCTTCCTGCGCATGAAGTGC
GTCCTGGCCAAAAGGAACGCGGGCCTCACCACCTCCGGATTTAAGGTGAT
ACACTGCTCCGGCTATCTGAAGGCTCGCATCTATCCCGATCGCGGGGATG
GACAGGGCAGCCTCATCCAGAATCTCGGCCTGGTGGCCGTCGGTCACTCG
CTGCCTTCATCCGCCATCACGGAAATCAAGCTGCACCAGAATATGTTCAT
GTTCCGGGCCAGCTGGACATGAAGCTCATCTTCTTCGATGCACGCGTATC
GCAGCTACAGATACGAGCCGCAGACCTCATCGAGAGACCCTGTATCAGTA
TATCCACGCCGCGGACATCATGGCCATGCGCTGCTCTCATCAAATCTGCT
GTACAAGGACAGTGACCACCAGTACTACGCTCCTCCCCAAGCGGGCGCTG
GTTGTGGGTGGCAGTCGTACGCGACCTGGTGCCAATCCCGGATCTCGCGG
AATGTTCAT
UFO01485.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sim-RA | 2825 | CG7771-RA | 101..1218 | 9..1109 | 5025 | 97.7 | Plus |
sim-RB | 3162 | CG7771-RB | 489..1555 | 60..1109 | 4770 | 97.6 | Plus |
sim-RC | 2882 | CG7771-RC | 210..1275 | 61..1109 | 4765 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13072661..13072858 | 60..257 | 990 | 100 | Plus |
3R | 32079331 | 3R | 13075069..13075276 | 688..894 | 975 | 99 | Plus |
3R | 32079331 | 3R | 13074079..13074251 | 255..427 | 865 | 100 | Plus |
3R | 32079331 | 3R | 13074837..13075006 | 528..697 | 850 | 100 | Plus |
3R | 32079331 | 3R | 13074568..13074672 | 423..527 | 525 | 100 | Plus |
3R | 32079331 | 3R | 13076216..13076304 | 910..996 | 345 | 97.8 | Plus |
3R | 32079331 | 3R | 13072499..13072550 | 9..60 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:25:02 has no hits.
UFO01485.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:50 Download gff for
UFO01485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RA | 101..1200 | 9..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:31 Download gff for
UFO01485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RA | 98..1197 | 9..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:03 Download gff for
UFO01485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RA | 101..1200 | 9..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:03 Download gff for
UFO01485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13072499..13072550 | 9..60 | 100 | -> | Plus |
3R | 13072662..13072856 | 61..255 | 100 | -> | Plus |
3R | 13074080..13074249 | 256..425 | 100 | -> | Plus |
3R | 13074571..13074672 | 426..527 | 100 | -> | Plus |
3R | 13074837..13075004 | 528..695 | 100 | -> | Plus |
3R | 13075077..13075276 | 696..894 | 99 | -> | Plus |
3R | 13076199..13076305 | 895..996 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:50 Download gff for
UFO01485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8898221..8898272 | 9..60 | 100 | -> | Plus |
arm_3R | 8898384..8898578 | 61..255 | 100 | -> | Plus |
arm_3R | 8899802..8899971 | 256..425 | 100 | -> | Plus |
arm_3R | 8900293..8900394 | 426..527 | 100 | -> | Plus |
arm_3R | 8900559..8900726 | 528..695 | 100 | -> | Plus |
arm_3R | 8900799..8900998 | 696..894 | 99 | -> | Plus |
arm_3R | 8901921..8902027 | 895..996 | 95 | -> | Plus |