UFO01486.5prime Sequence
1131 bp (1011 high quality bases) assembled on 2008-09-15
> UFO01486.5prime
CAGTCGACATGGCACCACAGAGCAACAACAGCACCACATTCGTCTCCAAG
ACCCAGCACTATTTGAAGGTGAAGAAGCCCCTTTTGGAGCGCCAGCGTCG
GGCCCGCATGAACAAGTGTTTGGACACCTTGAAGACCTTGGTGGCCGAGT
TCCAGGGCGATGATGCCATCCTGCGAATGGACAAGGCCGAGATGCTGGAG
GCGGCACTCGTCTTCATGCGCAAACAGGTCGTCAAGCAGCAGGCGCCGGT
CTCCCCACTTCCCATGGATAGCTTCAAGAATGGCTACATGAACGCCGTCA
GCGAGATCTCCCGTGTGATGGCCTGCACTCCAGCCATGAGTGTGGATGTG
GGCAAGACAGTGATGACCCATCTGGGCGTCGAGTTCCAGCGCATGCTGCA
GGCCGATCAGGTCCAGACTTCTGTTACAACCTCCACCCCACGCCCACTCA
GCCCCGCCTCCTCGGGATACCACAGCGATAACGAGGACTCTCAATCCGCC
GCCAGCCCCAAGCCAGTCGAAGAAACCATGTGGCGCCCTTGGAAAGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATAATATTTGCCCATGGTGAAACGGGGCGAAGAGTGTCCATA
TGCCACGTTTAATCAAACTGTGAACTCACCAGGGATGCTGAAACGAAAAC
ATATTCTCATAATCCTTTAGGAATAGCCAGTTTTCACGTACACGCCATCT
GCAATTATGTGTAGAACTGCGAATCGTCTGAATCACTCGAGCGGATAGAA
CGTTCAGTGCCTATGACGGGTAACAAGGTGA
UFO01486.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)m5-HLH-RA | 882 | CG6096-RA | 84..617 | 9..542 | 2670 | 100 | Plus |
| E(spl)m8-HLH-RA | 769 | CG8365-RA | 98..434 | 46..376 | 455 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26029119..26029652 | 542..9 | 2670 | 100 | Minus |
| 3R | 32079331 | 3R | 26040337..26040673 | 46..376 | 385 | 75.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:56:52 has no hits.
UFO01486.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:19 Download gff for
UFO01486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m5-HLH-RA | 75..624 | 1..548 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:34 Download gff for
UFO01486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLHm5-RA | 75..624 | 1..548 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:20 Download gff for
UFO01486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m5-HLH-RA | 75..624 | 1..548 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:20 Download gff for
UFO01486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26029119..26029661 | 1..542 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:19 Download gff for
UFO01486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21854841..21855383 | 1..542 | 99 | | Minus |
