UFO01488.5prime Sequence
685 bp (552 high quality bases) assembled on 2008-09-15
> UFO01488.5prime
CAGTCGACATGGAGAACCTGTCGCACTTGTATCCACCGCAGTTGCCAAAG
GGGCGTGGTCGGCCTCGAGCGACATACGCCCAAACGGGCGAGTTTGATCT
GGGTCTGATCCGGGAATACCGATCGCACCCAGTGCTGTACGATAGGTCAA
ACAAGCGGTTCAAGGACAAGCTGTATGTGGCCCATATATGGGAACAGATA
GCCCACAAACTGGGCTACGATGCCACCAGTATAAGGGAACGGATGACCAC
GTTAAGGAATCGATATAACATCGAGAAGCGACGCGTCGAGAATGGCCTTT
CCACACAGTCTTCACAATGGCCTCTATTCGAAAGCCTCCAGTTTCTGGGG
GATCACATACGGCCCAGGCGCAGCTTTAAGAACATGAGCGTAAAGGAGGA
GGATGAGGAGACCTACGAGGTGGACGATTGCCGGAGCGACAGCAACGGGC
ATATGAACAGCATCAAGGACGAACTGGAGGACGACTCCGAGATCTTCGAT
TGCGAGCAGCACTCCCCGTGACCACAGTGTTAGGGATTCCCCTGATACTC
TGACGAAGCCAACAAGAGCAGCGCTCGACGAATGGAGAATGCCCATGGCA
AGGCTACATCACTTGCGGAAAGCTTTCCACCGACGACCAAAACAGCGGAG
TAATCATCAGTAGTTCATTGTTATCCATGAGACAA
UFO01488.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jigr1-RG | 1607 | CG17383-RG | 394..1072 | 9..673 | 2980 | 97.4 | Plus |
| jigr1-RF | 1635 | CG17383-RF | 422..1100 | 9..673 | 2980 | 97.4 | Plus |
| jigr1-RE | 1782 | CG17383-RE | 422..1100 | 9..673 | 2980 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25649184..25649498 | 222..535 | 1525 | 99.7 | Plus |
| 3R | 32079331 | 3R | 25648899..25649112 | 9..222 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:09:56 has no hits.
UFO01488.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:42 Download gff for
UFO01488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jigr1-RE | 417..1110 | 1..681 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:36 Download gff for
UFO01488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jigr1-RE | 433..1126 | 1..681 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:44 Download gff for
UFO01488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jigr1-RE | 417..1110 | 1..681 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:44 Download gff for
UFO01488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25648894..25649112 | 1..222 | 98 | -> | Plus |
| 3R | 25649185..25649497 | 223..534 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:42 Download gff for
UFO01488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21474616..21474834 | 1..222 | 98 | -> | Plus |
| arm_3R | 21474907..21475219 | 223..534 | 99 | -> | Plus |
