UFO01493.5prime Sequence
1130 bp (1010 high quality bases) assembled on 2008-09-15
> UFO01493.5prime
CAGTCGACATGTTGAGACACTGCCTCGCCAACGTCGACTACGTCCGCCTG
CACGCCCAGCAGCAGTTGCGTCCCAAATGCGGCGAGATCTTCTACGAACC
GGAGGCGAATAGATTCCAACTGGTCTGCCTGCTCTGCGACATGAAGCACT
TTGGATTCGAGGACTTCGCCCGCCATATCCGTAATGTGCACTTCGACAAG
CAGGGCCGACCGCTCACCAAGACGGTCACGGGACTGGGCAGACTAGCACG
AGAGGAACAGGAGTTCCAAGGGGTCAGCGCAGAACCATTGGCTGTGGACA
GCTTCAAGAAAGAGTACCTGCCCAACGAGGATGTTCTGTCGGAGGAGGAG
GACGCGGAACAGGAGCTGGGACTGGAACAGGACGAGGGCAATCCACTACG
CATCATGGTGCTCGGGGGTAAACAGTCCGTGGACGAGGAGACCATCGATA
CGATGTGGCAGCCGGATCATGACAGTTCCTCCGCATCCGTCAACGAGGGG
TGCGCTCTGGAGGCTCTGTTGGGCGTGGAAAATCCGCAAGACTATCAACC
GGATGAGGACGGGGAGGAGCACCAGTCTGTTTTTAAGAAGCAGCGCCAAC
CAAAGGACTACAACTGCCCACACTGCGACAGGAGGTACACGACGCAGAAA
TACCTAAACACCCACCTAAAGATGAGCCATCCGTTTCCGCAGGCCTTCAA
GTGCGTCGACTGCAAAGCCACCTTCGATGTGGACCGAGCATTGGCCCAGC
ATCGTCGCAAGGAGCACACGGAGTTCGCCTGCCAGCTATGCGACAAGGTG
TTCAAAAGCTCGCGATCCCTTCTTCGCCATGTGCAGGGTCACTCCGGCGC
CAGGACATTCAAGTGTGAGCACGAGAACTGCGGCAAGTCGTTTGTCAACC
AGCACACCTCACTCGCATCGGCGGGTCCACAGCGAGGAGCGGAACTACGT
GTGCGAGCTGTGCGGCTATAGATCCCGCTACCGGGAGGCGTTGATCGTCC
ACGGCGCACGCATACGGCGAAAAACCCTTCAGTGCAGACTGTGTGCCGCC
GCTTGCCTCAGTCGCTGCTCACGAGACACCAGCATGCATTCAACGGAGAA
GCCCTACAGGCACAAATGGATTCGGCCTTC
UFO01493.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10959-RA | 1836 | CG10959-RA | 116..1252 | 9..1130 | 5180 | 98 | Plus |
| CG10959-RB | 1830 | CG10959-RB | 116..1246 | 9..1130 | 5080 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8148898..8149476 | 9..587 | 2895 | 100 | Plus |
| X | 23542271 | X | 8149543..8149991 | 586..1030 | 2030 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:01:23 has no hits.
UFO01493.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:20 Download gff for
UFO01493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10959-RA | 110..1252 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:38 Download gff for
UFO01493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10959-RA | 23..1165 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:01 Download gff for
UFO01493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10959-RA | 110..1252 | 1..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:01 Download gff for
UFO01493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8148892..8149476 | 1..587 | 99 | -> | Plus |
| X | 8149545..8150102 | 588..1130 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:20 Download gff for
UFO01493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8042925..8043509 | 1..587 | 99 | -> | Plus |
| arm_X | 8043578..8044135 | 588..1130 | 95 | | Plus |
