UFO01494.5prime Sequence
1081 bp (904 high quality bases) assembled on 2008-09-15
> UFO01494.5prime
CAGTCGACATGGCGTTCGGGGCGGTACTACACACCAGCCAGCACAATATC
GGTCGCAGTGAACCGCCGGTGGGCGTGGGCGATCCCTGCGCCGGATGCAA
CAAGCCCATCCTGGACAAGTTCCTGCTGAATGTCCTGGAACGCGCCTGGC
ACGCCTCCTGCGTCCGCTGCTGTGAATGCCTCCAACCGCTCACCGACAAA
TGCTTCAGCCGCGAATCGAAGCTCTACTGTCGCAACGATTTCTTCAGACG
TTACGGCACCAAGTGCAGTGGGTGTGGCCAGGGTATCGCGCCATCGGATC
TAGTGCGAAAGCCCAGGGACAAGGTCTTCCACCTAAACTGCTTCACCTGC
TGCATCTGCCGCAAGCAATTGAGCACAGGTGAGCAGCTCTACGTGCTGGA
CGACAATAAGTTCATCTGCAAGGACGACTATCTGCTGGGCAAGGCGCCAT
CCTGCGGCCACAATTCGCTGAGCGATTCATTAATGGGCTCGGCGAGCGAA
GACGATGACGACGATGATCCGCCGCATTTGCGGGCCACGGCACTCGGATT
GGGCGTACTGGGGCCCAACGGACCCGACTCAGCGGGCGGACCTCTGGGCA
CATCGGATATATCAGTACAAAGCATGAGCACCGATAGCAAAAATACCCAT
GACGATTCCGATCAGGGCTCCTTGGACGGCGATCCGGATGGACGTGGCGA
TTCCCAGGCGGAGAACAAAAGTCCCGACGATGCCAACGGATCGAAGCGAC
GCGGTCCGCGCACCACCATCAAGGCCAAACAGCTGGAGGTGCTCAAGACG
GCCTTCAATCAGACGCCGAAGCCGACACGCCACATCAGGAGCACTGGCCA
AGGAGACCGGGCTGCCCATGCGAGTCATACAGTGTGGTTCAGAATAAACG
GTCGAGGAGCGACGCATGAAACAAATCACCAGCATGGGCCGCCCGCCCTT
TTCGGTGGCGCCGGAAATGAGGGGCTTCCCATGACCTCTCGCCGGCGGAC
TGACGACGGACCGCTTTCCTACTCCGGGCGGACGCCAAGTTCGAGTTCGG
CTACGGGGACTTCACCGCCGGAAGGAACTAT
UFO01494.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lim1-RA | 3081 | CG11354-RA | 799..1862 | 9..1056 | 4915 | 98.4 | Plus |
| Lim1-RB | 2708 | CG11354-RB | 170..768 | 474..1056 | 2590 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8787610..8787839 | 474..245 | 1150 | 100 | Minus |
| X | 23542271 | X | 8768056..8768278 | 882..662 | 1015 | 99.1 | Minus |
| X | 23542271 | X | 8788734..8788930 | 247..51 | 985 | 100 | Minus |
| X | 23542271 | X | 8768751..8768943 | 666..474 | 965 | 100 | Minus |
| X | 23542271 | X | 8758769..8758947 | 1056..890 | 335 | 92.2 | Minus |
| X | 23542271 | X | 8804962..8805006 | 53..9 | 225 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 240..325 | 494..582 | 122 | 62.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11418..11503 | 494..582 | 122 | 62.9 | Plus |
UFO01494.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:18 Download gff for
UFO01494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lim1-RA | 793..1876 | 1..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:27 Download gff for
UFO01494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lim1-RA | 764..1847 | 1..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:57 Download gff for
UFO01494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lim1-RA | 793..1876 | 1..1066 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:57 Download gff for
UFO01494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8768056..8768274 | 666..882 | 99 | <- | Minus |
| X | 8768752..8768942 | 475..665 | 100 | <- | Minus |
| X | 8787610..8787836 | 248..474 | 100 | <- | Minus |
| X | 8788734..8788939 | 41..247 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:18 Download gff for
UFO01494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8662089..8662307 | 666..882 | 99 | <- | Minus |
| arm_X | 8662785..8662975 | 475..665 | 100 | <- | Minus |
| arm_X | 8681643..8681869 | 248..474 | 100 | <- | Minus |
| arm_X | 8682767..8682972 | 41..247 | 97 | <- | Minus |
