Clone UFO01495 Report

Search the DGRC for UFO01495

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:14
Well:95
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG3909-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01495.5prime Sequence

389 bp (304 high quality bases) assembled on 2008-09-15

> UFO01495.5prime
CAGTCGACATGTTTTCTGTCCTTCATAAAGAGGAAAATGCGCACGACAGT
CAGCTATGGGCGTGCACCTGGGGACGCGACACTGCGGCCTCAGATCCGGA
TGACGCGGTCGTGGAGCCCGAGGAGAATCCCTTTGATTTCGATAAGAAGG
AGGCCCGCCCGAAGGATTTCTTGGTCACCGGCGGACTGGATGACTTGGTA
AAGGTGTGGGACTTGCAGGAGGACAACACCCTAAAGTTGCGCCACAAACT
AAAAGGACATGCCCTGGGAGTTGTTTCTGTGGCCCGTCAGTTCCGATGGA
CAGACCATTGCCAGTAGTTTCTCTGGACTCCACCATGTGTTTGTGGGATG
CCCCGTTCGGGCGAACAAGAAAACCCCTACTTAGCTTTG

UFO01495.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-RA 1102 CG3909-RA 78..453 9..389 1765 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10043402..10043694 11..304 1420 99.7 Plus
3R 32079331 3R 10043766..10043846 305..389 210 94.1 Plus
Blast to na_te.dros performed on 2014-11-28 23:10:29 has no hits.

UFO01495.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:25 Download gff for UFO01495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 78..453 9..389 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:29 Download gff for UFO01495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 90..465 9..389 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:03 Download gff for UFO01495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 78..453 9..389 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:03 Download gff for UFO01495.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10043397..10043694 5..304 98 -> Plus
3R 10043766..10043846 305..389 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:25 Download gff for UFO01495.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5869119..5869416 5..304 98 -> Plus
arm_3R 5869488..5869568 305..389 94   Plus