UFO01501.5prime Sequence
1211 bp (1019 high quality bases) assembled on 2008-10-06
> UFO01501.5prime
CAGTCGACATGAATATCTTTCGCTTTGCTGGGGATCTGTCGCATGTGTTT
GCCATCATAATACTGCTGCTGAAGATATGGAAGACCCGCTCGTGCGCCGG
AATATCGGGCAAGTCGCAGATCCTGTTCGCCGTGGTCTATCTGACGCGCT
ACCTGGATCTGTTCACCACCTACGTGAGCCTGTACAACTCGGTGATGAAG
GTGTTGTTCCTGGCCACGTCCGGTGCCACCGTGTATTTGATGTACGTGAA
GTTTAAGGCCACCTATGACCACAATCACGATTCGTTCCGCATCGAATTCC
TGCTGGTGCCGTGCGCCCTGCTCTCGCTGGTGATCAATCATGAGTTTACC
GTGATGGAAGTGCTGTGGACATTCTCGATCTATTTGGAATCGGTGGCCAT
TCTGCCGCAGCTGTTCCTAGTGAGCAGAACCGGCGAGGCCGAGTCCATCA
CCAGCCACTACCTCTTCGCCCTGGGATCGTACCGTGCACTCTACTTGCTC
AACTGGGTCTACCGGTACATGGTCGAGTCGCACTACGACCTTATCGCGAT
CTTCGCCGGAGTTGTCCAGACCGTCTTGTACTGCGACTTCTTCTACTTAT
ACATTACCAAAGTTCTTAAGGGCAAGAAGCTCCAGCTGCCGGCAGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGGATCTATCAAC
AGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCCGCCCCTGCCACCTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGAAGCCATC
ACAAACTGCATGATGAACCTGAATCGCCAGCGGCATCAGCACTTGTCGCC
TGCGTATAATATTTGCCCATGTGAAACGGGGCGAAGAGTTGTCATTATTG
CCACGTTAATCAACTGTGAAACTCACCCAGGATGCTGAACGAAACTTTTC
ATAAACCTTTAAGAAATAGGCCAGTACCGTAACCGCCACACTCTGCAATA
TTATTGTAAACTGCCGGAATCGCTCGGTAATATAGCTTTCACTCTCCACT
CACAAGCGGGT
UFO01501.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KdelR-RC | 1679 | CG5183-RC | 218..853 | 9..644 | 3180 | 100 | Plus |
| KdelR-RB | 1273 | CG5183-RB | 285..920 | 9..644 | 3180 | 100 | Plus |
| KdelR-RA | 1201 | CG5183-RA | 213..848 | 9..644 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10427171..10427806 | 9..644 | 3180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:38:37 has no hits.
UFO01501.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:20 Download gff for
UFO01501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KdelR-RB | 276..925 | 1..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:37:07 Download gff for
UFO01501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KdelR-RA | 224..873 | 1..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:33 Download gff for
UFO01501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KdelR-RA | 204..853 | 1..650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:33 Download gff for
UFO01501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10427162..10427811 | 1..650 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:20 Download gff for
UFO01501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10427162..10427811 | 1..650 | 99 | == | Plus |
