UFO01504.5prime Sequence
821 bp (821 high quality bases) assembled on 2008-10-06
> UFO01504.5prime
CAGTCGACATGGGTCTCAACGGCTGCTGTTCGTGCGTCAAATATCTGATG
GTCCTTATAAACATTTTATTCTGGCTCATCGGACTGACCATCGTGGTGAC
CTCCGTTTGGATGCTGACGGATCCCACATTTATGCTGTCGATGACACAGA
ACTACAATCATTATCACATAGCCCTGTATGTTTTCCTCGCCATCGGCATA
CTGATCACATTGGGCGCATTCTTTGGCTGTTGCGGAGTCTGTCGTGAGTC
GCAATGTCTGCTGGTTTCGTTCTTCTGTGTCATACTCATCGTGATGGTGG
CACAAATTGCAGCCGGAGCATGGGCCTTCCACAACAAAGACAAGCTGGAT
GACATCGTGCGGGCGGCTGTCAAGTCGTCAGTCCAGGAGGAGTACGGCCA
GTCCACGATGAGTTCGCGCACCGTCACCTTTGATACGCTGCAAAAGAATT
TGAAATGCTGCGGCGCCGATGGACCTGGAGATTGGGCCACGAGTCGGTTT
AATAATGTGGATCGCACAAATATTGTGGAGATCGCCGTGTCTTCCATGAA
TGTCTTCTATAACATACCCGAGTCCTGCTGCAAGGATAATCTAAAGGATA
ATGAGTGTGAGCTGTCCAGACGCCTGAAATTTGGTGGCCCATTGAACAAC
GCCATTTATCAGCACGGCTGCGTGGACAAGCTGATTGAAATCATCTACGA
GAACTGGGTCACCATTTTCGCCGTCACCGCCGCTGTCATTCTGCTGGAGC
TGCTGTCCCTGACTTTCGCCCTGAGCCTCTGCTGCGCGGTGAGGAATCAG
CACTACAAGGCCGCAAGCTTT
UFO01504.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp96F-RC | 3343 | CG6120-RC | 346..1150 | 8..812 | 4010 | 99.9 | Plus |
| Tsp96F-RB | 2709 | CG6120-RB | 346..1150 | 8..812 | 4010 | 99.9 | Plus |
| Tsp96F-RA | 2709 | CG6120-RA | 346..1150 | 8..812 | 4010 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25875660..25875874 | 664..450 | 1075 | 100 | Minus |
| 3R | 32079331 | 3R | 25876532..25876727 | 269..74 | 980 | 100 | Minus |
| 3R | 32079331 | 3R | 25875945..25876125 | 449..269 | 905 | 100 | Minus |
| 3R | 32079331 | 3R | 25875093..25875243 | 812..662 | 740 | 99.3 | Minus |
| 3R | 32079331 | 3R | 25881016..25881082 | 74..8 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:28:04 has no hits.
UFO01504.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:40 Download gff for
UFO01504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp96F-RA | 340..1150 | 1..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:37:20 Download gff for
UFO01504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp96F-RA | 353..1163 | 1..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:41 Download gff for
UFO01504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp96F-RA | 340..1150 | 1..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:41 Download gff for
UFO01504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25875093..25875239 | 666..812 | 100 | <- | Minus |
| 3R | 25875659..25875874 | 450..665 | 99 | <- | Minus |
| 3R | 25875945..25876124 | 270..449 | 100 | <- | Minus |
| 3R | 25876532..25876726 | 75..269 | 100 | <- | Minus |
| 3R | 25881016..25881087 | 1..74 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:40 Download gff for
UFO01504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21702254..21702448 | 75..269 | 100 | <- | Minus |
| arm_3R | 21706738..21706809 | 1..74 | 95 | | Minus |
| arm_3R | 21700815..21700961 | 666..812 | 100 | <- | Minus |
| arm_3R | 21701381..21701596 | 450..665 | 99 | <- | Minus |
| arm_3R | 21701667..21701846 | 270..449 | 100 | <- | Minus |
