UFO01507.5prime Sequence
1207 bp (996 high quality bases) assembled on 2008-10-06
> UFO01507.5prime
CAGTCGACATGTCGACGATTGTGAGGAAACTTATCAGCACTGCAAATGCT
GCCAAGCCAGTGGCTCCCTACAACCAGGCTGTGGTGGCCGATCGTACTGT
GTATGTGTCCGGATGTCTGGGTCTGGACAAGGACACCATGAAACTGGTTC
CTGGAGGACCCACTGAACAAGCGCAGAAGGCATTGGAGAATCTGGAGGCT
GTTCTAAAGGCGGCCGATTCCGGAGTGGACAAAGTCATCAAGAACACAGT
GTTCTTGAAGGATCTCAACGATTTCGGGGCAGTCAATGAGGTCTACAAGC
GGGTGTTCAATAAGGATTTCCCGGCCCGCAGCTGTTTCCAGGTGGCCAAG
CTGCCCATGGATGCTCTGGTGGAGATCGAGTGCATTGCCTTGACCGGATC
TGTGGAGACGAAAACCGTGCAAGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGA
ATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCAT
GGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAA
AACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCAA
TAAACCCTTTAGGGAAATAGGCCAGTTTCACCGTACACGCCACATCTTGC
GATATATGGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCAGAGCG
ATGAACGTTTCAGTTTGCTCATGGAAACGGTGTACAGGGTGAACACATTT
CCATTATCACCAGCTCACGTCTTTCATTGCATACGAATTCCGGAATGACA
ATCATCAGGCGGGCAGATGGAATTAAGGCCGATAAACCTTGGCCTTATTT
TCCTACGGCCTTGAAAGGCGCGTAATACCAGCGTGAACGGGTCGTGTTAT
ATAGGGA
UFO01507.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UK114-RB | 610 | CG15261-RB | 106..519 | 9..422 | 2070 | 100 | Plus |
| UK114-RA | 553 | CG15261-RA | 106..519 | 9..422 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15274620..15274849 | 303..74 | 1150 | 100 | Minus |
| 2L | 23513712 | 2L | 15274272..15274391 | 422..303 | 600 | 100 | Minus |
| 2L | 23513712 | 2L | 15274922..15274986 | 73..9 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:54 has no hits.
UFO01507.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:49 Download gff for
UFO01507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UK114-RA | 96..527 | 1..429 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:38:22 Download gff for
UFO01507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UK114-RA | 33..464 | 1..429 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:03 Download gff for
UFO01507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UK114-RA | 96..527 | 1..429 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:03 Download gff for
UFO01507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15274272..15274390 | 304..422 | 100 | <- | Minus |
| 2L | 15274620..15274849 | 74..303 | 100 | <- | Minus |
| 2L | 15274922..15274992 | 1..73 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:49 Download gff for
UFO01507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15274272..15274390 | 304..422 | 100 | <- | Minus |
| arm_2L | 15274620..15274849 | 74..303 | 100 | <- | Minus |
| arm_2L | 15274922..15274992 | 1..73 | 94 | | Minus |
