UFO01514.5prime Sequence
1202 bp (1009 high quality bases) assembled on 2008-10-06
> UFO01514.5prime
CAGTCGACATGTCGCATTCAGTGACCATTACCCGCACCACCACCAGCACC
ACCAACACCTCCTACATTGTCCTGAACACGGGCTATCTGAAGACTTTCCC
CGGCATCCTCAAGCTCTTCGAGCTGATCATTGGTGCTTCCATTGTGGGAA
TTCTGGCGTTCAACTACCAGGACTACCACAGATACTTCTATGGCCAGCAG
GATCTGTTCCATTATCTGATGGCCGTTACCTTTATGATAGGAACGTTCTG
TTTACTCCTCGCCTGCCTCACGTCGCTCAGCACGGGCGGCATTATTGCCA
AGACGATCTATGAGCTGATTTACCACAGTGTGGCCGCCATCCTGATCCTG
GTCTCGTCCACCATCCTGCTGCTCAAGCTGCGCGATGTAAAGCACGACGC
CTATATGGCAGCCGGTGTTTTGGGCCTGGTCAATGCGGTGCTGTACTTCA
TCAGCGCCTTCCTGGCCCACCGATCCTATCGCGGCATTGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATATATTTGCCCATGGTGAAACGGGGGCGAAGAGTTGTTCATATTGGCC
ACGTTTAAATCAACTTGGTGAACTCACCCAGGATTGCTGAGACGAAAAAC
ATATTTCTCATAACCCTTTAGGAAATAGCCAGGTTTCACGTACACGCCCA
TCTTGCCAATATTTGGTGTAGAACTGCCGAAATCGTTCTTGTTATTCCCT
CCGAGCGATGAAACGTTTCAGTTGCTCATGAACGGGTACAGTTACCCATC
ATATCACAGCTTCCCGCCTCTTGCATCGATTCCGGATGACCTCTCAGCCG
CAATGTATACGCCGAACTTGGTCTTATTTTCCTTTACGGCTTTAAAGGGC
GC
UFO01514.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1572-RD | 889 | CG1572-RD | 76..555 | 9..488 | 2400 | 100 | Plus |
| CG1572-RC | 1245 | CG1572-RC | 197..676 | 9..488 | 2400 | 100 | Plus |
| CG1572-RB | 974 | CG1572-RB | 161..640 | 9..488 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11555925..11556112 | 312..125 | 940 | 100 | Minus |
| X | 23542271 | X | 11555619..11555795 | 488..312 | 885 | 100 | Minus |
| X | 23542271 | X | 11556184..11556300 | 125..9 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:58:35 has no hits.
UFO01514.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:47 Download gff for
UFO01514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1572-RB | 151..649 | 1..500 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:38:28 Download gff for
UFO01514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1572-RA | 134..632 | 1..500 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:41 Download gff for
UFO01514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1572-RB | 151..649 | 1..500 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:41 Download gff for
UFO01514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11555619..11555795 | 312..488 | 100 | <- | Minus |
| X | 11555926..11556111 | 126..311 | 100 | <- | Minus |
| X | 11556184..11556307 | 1..125 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:47 Download gff for
UFO01514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11449652..11449828 | 312..488 | 100 | <- | Minus |
| arm_X | 11449959..11450144 | 126..311 | 100 | <- | Minus |
| arm_X | 11450217..11450340 | 1..125 | 96 | | Minus |
