UFO01515.5prime Sequence
1213 bp (1004 high quality bases) assembled on 2008-10-06
> UFO01515.5prime
CAGTCGACATGAAGTTCCAATACAAGGAGGAGCACGCCTTCGAGAAGCGT
CGCGCCGAGGGCGACAAGATCCGTCGCAAATATCCAGACCGTGTGCCCGT
CATCGTCGAGAAGGCTCCCAAGGCGCGCATCGGTGATTTGGACAAGAAGA
AGTACCTGGTGCCTTCCGACCTGACCGTCGGTCAGTTCTACTTCCTCATT
CGCAAGCGCATCCACCTGCGTCCCGAGGATGCCCTCTTCTTCTTTGTGAA
CAACGTCATTCCACCAACATCGGCTACCATGGGCTCCCTGTACCAGGAAC
ATCACGAGGAGGACTATTTCCTGTACATTGCCTACTCCGATGAGAATGTT
TACGGCATGGCCAAAATTAACGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATG
GTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAA
ACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAA
TAAACCCTTTAGGAAATAGGCCAGGTTTCACCGTAACACGCCACATCTTG
CGAATATATGTGTAGAAACTGCCGGAATCGTCGTGTATTCACTCCAGAGC
GATGAAACGTTTCAGTTTGCTCATGAAAACGTGTAACAGGGTGAACACTT
TCCCATATCACAGCTCACCGTCTTTCATTGCCACGAAATCCGGATGACAT
CATCAGGCGGGCAAGAATGTGATAGCGATAAACTGGTGCTTATTTTTCTT
TACGGTTCTAAGGCGTTAATCAGCCTGAACGGCCGTTAGGTCCTGACCTG
ACCTGAATGCCTAAGTCTTACAGTGCCATTGGGATATATCACAGGCGGTG
ATATATCCCCACG
UFO01515.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg8a-RA | 1214 | CG32672-RA | 268..631 | 8..371 | 1820 | 100 | Plus |
| Atg8a-RC | 1183 | CG32672-RC | 328..600 | 99..371 | 1365 | 100 | Plus |
| Atg8a-RB | 1010 | CG32672-RB | 155..427 | 99..371 | 1365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10765604..10765802 | 297..99 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 17724567..17724904 | 346..9 | 775 | 82 | Minus |
| X | 23542271 | X | 10767979..10768071 | 100..8 | 465 | 100 | Minus |
| X | 23542271 | X | 10765461..10765537 | 371..295 | 385 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 5841..5904 | 7..69 | 110 | 69.7 | Plus |
UFO01515.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:28 Download gff for
UFO01515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 256..635 | 1..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:38:29 Download gff for
UFO01515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 256..635 | 1..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:14 Download gff for
UFO01515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 259..638 | 1..380 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:14 Download gff for
UFO01515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10765461..10765535 | 297..371 | 100 | <- | Minus |
| X | 10765605..10765802 | 99..296 | 100 | <- | Minus |
| X | 10767981..10768075 | 1..98 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:28 Download gff for
UFO01515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10659494..10659568 | 297..371 | 100 | <- | Minus |
| arm_X | 10659638..10659835 | 99..296 | 100 | <- | Minus |
| arm_X | 10662014..10662108 | 1..98 | 95 | | Minus |
