UFO01516.5prime Sequence
1165 bp (996 high quality bases) assembled on 2008-10-06
> UFO01516.5prime
CAGTCGACATGGCCGCTGCCGCTGCGAGCGCAGTGAATGCAGTGAACGAC
TGCTTCAGCATCGGATCCACAGTCGTCTGTACGACCTGTTTCAACGAGGA
GGTGGAGGGCGAGGTGCTGGCCTTCGATCACAACACAAAGATGCTTATCC
TGAAATGCCGATCCAAGTCCACGGAGGAGCTGAGTGATATCTACGCGATG
AACCTCTCGCTCTGCAGCAACGTGCAGGTGATCAAGGAGTGCAACGGCAA
CTTTGATGATCCGCAAAAGCTTAATCTGGAACAGGTCAAAATGCGTCTGA
GGAAAACAGTTGAGCGAAGACAGGACTACTTGAAGTCTAAGAATGCTGAT
GTCAGTCCAGAGGCGCAGGAACTCTATAGAGCGATAGCCAAACAATACGG
GTACAATGAAGTCTCCTGGCAAGGACTTAACATACAGATCCTAAATGAAG
TCACCATCTCGCCGCCGTACCGAGTGGACAACGTGGTGTCCAGCTCGAAC
AACGAAACTTCATGCAACTACATCAAGCGCATCATCAAACAGTTCTTCAA
CACGAGGCCATCGCCCGTCCCGGAAAGCGGAGCTGCGGCCAGCACCTCGT
CACCATCGGTGTCTCCCACGTCCTCATCTCTTGCATCTGGATCGCCGGTT
CCCGCAAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTATTCATTAAGCATTCTGCGA
CATGCAGCATCACAAACGGCATGATGACCTGATCGCAGCGCATCAGCACT
GTCGCTGGCGTATATATTGCCCATGTGAAACGGGGGGCGAGAGTGTCATA
TTGCCACGTTAATCAAACTGTGACTCACCAGGAATGCTGAACGAAACATT
CCCATACGTAGGAATGCAGTTACGTACCGCCACTCTGGCGAATATTGTGT
AGAAACTGTGCCGGG
UFO01516.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15735-RA | 1251 | CG15735-RA | 542..1192 | 9..659 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12019181..12019325 | 9..153 | 725 | 100 | Plus |
| X | 23542271 | X | 12019628..12019760 | 154..286 | 665 | 100 | Plus |
| X | 23542271 | X | 12020006..12020138 | 401..533 | 665 | 100 | Plus |
| X | 23542271 | X | 12020535..12020660 | 534..659 | 630 | 100 | Plus |
| X | 23542271 | X | 12019821..12019941 | 281..401 | 605 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 4845..4904 | 617..557 | 113 | 67.2 | Minus |
UFO01516.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:30 Download gff for
UFO01516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15735-RA | 542..1195 | 9..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:38:40 Download gff for
UFO01516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15735-RA | 538..1191 | 9..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:16 Download gff for
UFO01516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15735-RA | 542..1195 | 9..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:16 Download gff for
UFO01516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12019181..12019325 | 9..153 | 100 | -> | Plus |
| X | 12019628..12019758 | 154..284 | 100 | -> | Plus |
| X | 12019825..12019941 | 285..401 | 100 | -> | Plus |
| X | 12020007..12020138 | 402..533 | 100 | -> | Plus |
| X | 12020535..12020672 | 534..676 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:30 Download gff for
UFO01516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11913214..11913358 | 9..153 | 100 | -> | Plus |
| arm_X | 11913661..11913791 | 154..284 | 100 | -> | Plus |
| arm_X | 11913858..11913974 | 285..401 | 100 | -> | Plus |
| arm_X | 11914040..11914171 | 402..533 | 100 | -> | Plus |
| arm_X | 11914568..11914705 | 534..676 | 93 | -> | Plus |
